Variant report

Variant	rs28502406
Chromosome Location	chr4:125933680-125933681
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10007243	1.00[AMR][1000 genomes]
rs10015455	1.00[AMR][1000 genomes]
rs10471027	1.00[AMR][1000 genomes]
rs28505453	1.00[AMR][1000 genomes]
rs28578480	1.00[AMR][1000 genomes]
rs28636919	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125932800-125935000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr4:125932800-125939800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr4:125932800-125940200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:125933000-125935000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr4:125933000-125939600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr4:125933000-125939800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr4:125933000-125949400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr4:125933200-125937400	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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