Variant report
| Variant | rs28636919 |
|---|---|
| Chromosome Location | chr4:125766595-125766596 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:125764608..125767385-chr4:125861503..125863790,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10007243 | 1.00[AMR][1000 genomes] |
| rs10012942 | 1.00[EUR][1000 genomes] |
| rs10015455 | 1.00[AMR][1000 genomes] |
| rs10019410 | 1.00[AMR][1000 genomes] |
| rs10026029 | 1.00[EUR][1000 genomes] |
| rs10471027 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28502406 | 1.00[AMR][1000 genomes] |
| rs28505453 | 1.00[AMR][1000 genomes] |
| rs28526774 | 1.00[EUR][1000 genomes] |
| rs28561980 | 1.00[EUR][1000 genomes] |
| rs28578480 | 1.00[AMR][1000 genomes] |
| rs28683747 | 1.00[EUR][1000 genomes] |
| rs72912782 | 1.00[EUR][1000 genomes] |
| rs72912784 | 1.00[EUR][1000 genomes] |
| rs72912785 | 1.00[EUR][1000 genomes] |
| rs72912797 | 1.00[EUR][1000 genomes] |
| rs72912800 | 1.00[EUR][1000 genomes] |
| rs72912801 | 1.00[EUR][1000 genomes] |
| rs72914611 | 1.00[EUR][1000 genomes] |
| rs72914618 | 1.00[EUR][1000 genomes] |
| rs72914633 | 1.00[EUR][1000 genomes] |
| rs9990868 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1011752 | chr4:125708756-125932456 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv1001338 | chr4:125708756-126103293 | Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv830050 | chr4:125717858-125888563 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv879883 | chr4:125732734-125767985 | Enhancers ZNF genes & repeats Strong transcription Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:125763600-125767400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr4:125765800-125767800 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
