Variant report

Variant	rs72912801
Chromosome Location	chr4:125707731-125707732
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10012942	1.00[EUR][1000 genomes]
rs10026029	1.00[EUR][1000 genomes]
rs10471027	1.00[EUR][1000 genomes]
rs28526774	1.00[EUR][1000 genomes]
rs28561980	1.00[EUR][1000 genomes]
rs28636919	1.00[EUR][1000 genomes]
rs28683747	1.00[EUR][1000 genomes]
rs28836257	1.00[EUR][1000 genomes]
rs313893	1.00[EUR][1000 genomes]
rs313899	1.00[EUR][1000 genomes]
rs313900	1.00[EUR][1000 genomes]
rs536494	1.00[EUR][1000 genomes]
rs567082	1.00[EUR][1000 genomes]
rs72912782	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72912784	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72912785	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72912797	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72912800	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72914611	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72914614	1.00[AFR][1000 genomes]
rs72914618	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72914633	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9990868	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv437423	chr4:125705944-125707773	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125706400-125707800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr4:125707400-125707800	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr4:125707600-125708400	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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