Variant report

Variant	rs10012942
Chromosome Location	chr4:125796267-125796268
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10022783	0.83[AMR][1000 genomes]
rs10026029	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10026376	1.00[AMR][1000 genomes]
rs10033965	1.00[AMR][1000 genomes]
rs10212646	1.00[AMR][1000 genomes]
rs10471027	1.00[EUR][1000 genomes]
rs28373772	1.00[AMR][1000 genomes]
rs28461891	1.00[AMR][1000 genomes]
rs28526774	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28559727	1.00[AMR][1000 genomes]
rs28561980	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28636919	1.00[EUR][1000 genomes]
rs28683747	1.00[EUR][1000 genomes]
rs28878515	1.00[AMR][1000 genomes]
rs2893108	1.00[AMR][1000 genomes]
rs56234259	1.00[AMR][1000 genomes]
rs72912782	1.00[EUR][1000 genomes]
rs72912784	1.00[EUR][1000 genomes]
rs72912785	1.00[EUR][1000 genomes]
rs72912797	1.00[EUR][1000 genomes]
rs72912800	1.00[EUR][1000 genomes]
rs72912801	1.00[EUR][1000 genomes]
rs72914611	1.00[EUR][1000 genomes]
rs72914618	1.00[EUR][1000 genomes]
rs72914633	1.00[EUR][1000 genomes]
rs73845815	1.00[AMR][1000 genomes]
rs9307554	1.00[AMR][1000 genomes]
rs9990868	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011752	chr4:125708756-125932456	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv830050	chr4:125717858-125888563	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv879884	chr4:125791252-125841892	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv879885	chr4:125791252-125852874	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv879886	chr4:125791252-125856465	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125793600-125796800	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr4:125793800-125796400	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr4:125793800-125796600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:125794000-125796800	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr4:125795600-125796600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr4:125795600-125796600	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr4:125795600-125796600	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr4:125796000-125796800	Enhancers	H9 Cell Line	embryonic stem cell
9	chr4:125796200-125796400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr4:125796200-125796600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr4:125796200-125797800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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