Variant report

Variant	rs28373772
Chromosome Location	chr4:125825171-125825172
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:125631876..125635862-chr4:125822303..125828252,7	MCF-7	breast:
2	chr4:125632317..125635750-chr4:125823538..125828224,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151458	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10012942	1.00[AMR][1000 genomes]
rs10021315	0.94[AFR][1000 genomes]
rs10021730	0.94[AFR][1000 genomes]
rs10022783	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10026029	1.00[AMR][1000 genomes]
rs10026376	1.00[AMR][1000 genomes]
rs10033965	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10212646	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10471028	0.94[AFR][1000 genomes]
rs17008761	1.00[EUR][1000 genomes]
rs17008774	1.00[EUR][1000 genomes]
rs2390746	1.00[EUR][1000 genomes]
rs28461891	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28526774	1.00[AMR][1000 genomes]
rs28559727	1.00[AMR][1000 genomes]
rs28561980	1.00[AMR][1000 genomes]
rs28839783	0.94[AFR][1000 genomes]
rs28878515	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2893108	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56234259	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56276915	1.00[EUR][1000 genomes]
rs56819477	1.00[EUR][1000 genomes]
rs57913129	1.00[EUR][1000 genomes]
rs58495425	1.00[EUR][1000 genomes]
rs58752358	1.00[EUR][1000 genomes]
rs59571426	1.00[EUR][1000 genomes]
rs60218356	1.00[EUR][1000 genomes]
rs6824844	1.00[EUR][1000 genomes]
rs6829353	1.00[EUR][1000 genomes]
rs6852051	1.00[EUR][1000 genomes]
rs72912728	1.00[EUR][1000 genomes]
rs72912730	1.00[EUR][1000 genomes]
rs72912744	1.00[EUR][1000 genomes]
rs72912745	1.00[EUR][1000 genomes]
rs72912777	1.00[EUR][1000 genomes]
rs73845286	1.00[EUR][1000 genomes]
rs73845302	1.00[EUR][1000 genomes]
rs73845815	1.00[AMR][1000 genomes]
rs73845816	1.00[EUR][1000 genomes]
rs73845820	1.00[EUR][1000 genomes]
rs73848116	1.00[EUR][1000 genomes]
rs9307553	0.94[AFR][1000 genomes]
rs9307554	1.00[AMR][1000 genomes]
rs9990868	1.00[AMR][1000 genomes]
rs9991412	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011752	chr4:125708756-125932456	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv830050	chr4:125717858-125888563	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv879884	chr4:125791252-125841892	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv879885	chr4:125791252-125852874	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv879886	chr4:125791252-125856465	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv470069	chr4:125807868-125850998	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv879887	chr4:125816783-125847530	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv879888	chr4:125816783-125850022	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv879889	chr4:125816783-125853748	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125823400-125825800	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr4:125823800-125825200	Weak transcription	Pancreas	Pancrea
3	chr4:125823800-125826000	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr4:125824200-125833400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr4:125824600-125825400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:125824600-125825800	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr4:125824600-125825800	Enhancers	HSMM	muscle
8	chr4:125824600-125826000	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr4:125824800-125825200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr4:125824800-125825200	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr4:125824800-125825200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr4:125824800-125825200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr4:125824800-125825200	Active TSS	Brain Cingulate Gyrus	brain
14	chr4:125824800-125825200	Flanking Active TSS	Fetal Heart	heart
15	chr4:125824800-125825200	Enhancers	Ovary	ovary
16	chr4:125824800-125825200	Flanking Active TSS	HSMMtube	muscle
17	chr4:125824800-125825200	Enhancers	NHLF	lung
18	chr4:125824800-125825400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr4:125824800-125825400	Enhancers	H9 Cell Line	embryonic stem cell
20	chr4:125824800-125825400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr4:125824800-125825400	Enhancers	Psoas Muscle	Psoas
22	chr4:125824800-125825400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
23	chr4:125824800-125825400	Flanking Active TSS	NHDF-Ad	bronchial
24	chr4:125824800-125825600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr4:125824800-125825600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
26	chr4:125824800-125825600	Enhancers	Fetal Lung	lung
27	chr4:125824800-125825600	Enhancers	Small Intestine	intestine
28	chr4:125824800-125825800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr4:125824800-125825800	Active TSS	Aorta	Aorta
30	chr4:125824800-125825800	Enhancers	Fetal Kidney	kidney
31	chr4:125824800-125825800	Flanking Active TSS	NHEK	skin
32	chr4:125824800-125826000	Enhancers	HUES48 Cell Line	embryonic stem cell
33	chr4:125824800-125826000	Enhancers	Fetal Stomach	stomach
34	chr4:125824800-125826000	Flanking Active TSS	Hela-S3	cervix
35	chr4:125824800-125826200	Enhancers	Stomach Mucosa	stomach
36	chr4:125824800-125826600	Enhancers	HMEC	breast
37	chr4:125824800-125827000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr4:125825000-125825200	Enhancers	Breast Myoepithelial Primary Cells	Breast
39	chr4:125825000-125825200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr4:125825000-125825200	Enhancers	Adipose Nuclei	Adipose
41	chr4:125825000-125825200	Enhancers	Rectal Smooth Muscle	rectum
42	chr4:125825000-125825200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
43	chr4:125825000-125825400	Enhancers	H1 Cell Line	embryonic stem cell
44	chr4:125825000-125825400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr4:125825000-125825400	Flanking Active TSS	Fetal Muscle Leg	muscle
46	chr4:125825000-125825400	Flanking Active TSS	Osteobl	bone
47	chr4:125825000-125825600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr4:125825000-125825600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr4:125825000-125825600	Active TSS	Colon Smooth Muscle	Colon
50	chr4:125825000-125825600	Active TSS	Pancreatic Islets	Pancreatic Islet

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