Variant report

Variant	rs56234259
Chromosome Location	chr4:125778466-125778467
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10012942	1.00[AMR][1000 genomes]
rs10022783	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10026029	1.00[AMR][1000 genomes]
rs10026376	1.00[AMR][1000 genomes]
rs10033965	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10212646	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17008761	1.00[EUR][1000 genomes]
rs17008774	1.00[EUR][1000 genomes]
rs2390746	1.00[EUR][1000 genomes]
rs28373772	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28461891	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28526774	1.00[AMR][1000 genomes]
rs28559727	1.00[AMR][1000 genomes]
rs28561980	1.00[AMR][1000 genomes]
rs28878515	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2893108	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56276915	1.00[EUR][1000 genomes]
rs56819477	1.00[EUR][1000 genomes]
rs57913129	1.00[EUR][1000 genomes]
rs58495425	1.00[EUR][1000 genomes]
rs58752358	1.00[EUR][1000 genomes]
rs59571426	1.00[EUR][1000 genomes]
rs60218356	1.00[EUR][1000 genomes]
rs6824844	1.00[EUR][1000 genomes]
rs6829353	1.00[EUR][1000 genomes]
rs6852051	1.00[EUR][1000 genomes]
rs72912728	1.00[EUR][1000 genomes]
rs72912730	1.00[EUR][1000 genomes]
rs72912744	1.00[EUR][1000 genomes]
rs72912745	1.00[EUR][1000 genomes]
rs72912777	1.00[EUR][1000 genomes]
rs73845286	1.00[EUR][1000 genomes]
rs73845302	1.00[EUR][1000 genomes]
rs73845815	1.00[AMR][1000 genomes]
rs73845816	1.00[EUR][1000 genomes]
rs73845820	1.00[EUR][1000 genomes]
rs73848116	1.00[EUR][1000 genomes]
rs9307554	1.00[AMR][1000 genomes]
rs9990868	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011752	chr4:125708756-125932456	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv830050	chr4:125717858-125888563	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125776800-125778600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr4:125776800-125780800	Weak transcription	NHDF-Ad	bronchial
3	chr4:125776800-125783800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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