Variant report
| Variant | rs6852051 |
|---|---|
| Chromosome Location | chr4:125885914-125885915 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:125631616..125633726-chr4:125883727..125886839,4 | MCF-7 | breast: | |
| 2 | chr4:125633862..125636702-chr4:125883831..125887270,3 | MCF-7 | breast: | |
| 3 | chr4:125883788..125886065-chr4:126011029..126013746,2 | MCF-7 | breast: | |
| 4 | chr4:125884733..125886717-chr4:125893872..125895468,2 | MCF-7 | breast: | |
| 5 | chr4:125808803..125809436-chr4:125885151..125885920,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000151458 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10021176 | 1.00[EUR][1000 genomes] |
| rs10022783 | 1.00[EUR][1000 genomes] |
| rs10033965 | 1.00[EUR][1000 genomes] |
| rs10212646 | 1.00[EUR][1000 genomes] |
| rs17008761 | 1.00[EUR][1000 genomes] |
| rs17008774 | 1.00[EUR][1000 genomes] |
| rs2390746 | 1.00[EUR][1000 genomes] |
| rs28373772 | 1.00[EUR][1000 genomes] |
| rs28461891 | 1.00[EUR][1000 genomes] |
| rs28878515 | 1.00[EUR][1000 genomes] |
| rs2893108 | 1.00[EUR][1000 genomes] |
| rs56234259 | 1.00[EUR][1000 genomes] |
| rs56276915 | 1.00[EUR][1000 genomes] |
| rs56819477 | 1.00[EUR][1000 genomes] |
| rs58752358 | 1.00[EUR][1000 genomes] |
| rs59571426 | 1.00[EUR][1000 genomes] |
| rs60218356 | 1.00[EUR][1000 genomes] |
| rs6824844 | 1.00[EUR][1000 genomes] |
| rs6829353 | 1.00[EUR][1000 genomes] |
| rs73845302 | 1.00[EUR][1000 genomes] |
| rs73845816 | 1.00[EUR][1000 genomes] |
| rs73845820 | 1.00[EUR][1000 genomes] |
| rs73848116 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1011752 | chr4:125708756-125932456 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv1001338 | chr4:125708756-126103293 | Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv830050 | chr4:125717858-125888563 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:125882800-125891800 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
