Variant report

Variant	rs17008774
Chromosome Location	chr4:125824003-125824004
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:125631876..125635862-chr4:125822303..125828252,7	MCF-7	breast:
2	chr4:125632317..125635750-chr4:125823538..125828224,6	MCF-7	breast:
3	chr4:125806088..125809015-chr4:125822425..125824576,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151458	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10022783	1.00[EUR][1000 genomes]
rs10033965	1.00[EUR][1000 genomes]
rs10212646	1.00[EUR][1000 genomes]
rs17008761	1.00[EUR][1000 genomes]
rs17008877	0.85[YRI][hapmap]
rs2390746	1.00[EUR][1000 genomes]
rs28373772	1.00[EUR][1000 genomes]
rs28461891	1.00[EUR][1000 genomes]
rs28878515	1.00[EUR][1000 genomes]
rs2893108	1.00[EUR][1000 genomes]
rs56234259	1.00[EUR][1000 genomes]
rs56276915	1.00[EUR][1000 genomes]
rs56819477	1.00[EUR][1000 genomes]
rs57913129	1.00[EUR][1000 genomes]
rs58495425	1.00[EUR][1000 genomes]
rs58752358	1.00[EUR][1000 genomes]
rs59571426	1.00[EUR][1000 genomes]
rs60218356	1.00[EUR][1000 genomes]
rs6824844	1.00[EUR][1000 genomes]
rs6829353	1.00[EUR][1000 genomes]
rs6852051	1.00[EUR][1000 genomes]
rs72912728	1.00[EUR][1000 genomes]
rs72912730	1.00[EUR][1000 genomes]
rs72912744	1.00[EUR][1000 genomes]
rs72912745	1.00[EUR][1000 genomes]
rs72912777	1.00[EUR][1000 genomes]
rs73845286	1.00[EUR][1000 genomes]
rs73845302	1.00[EUR][1000 genomes]
rs73845816	1.00[EUR][1000 genomes]
rs73845820	1.00[EUR][1000 genomes]
rs73848116	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011752	chr4:125708756-125932456	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv830050	chr4:125717858-125888563	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv879884	chr4:125791252-125841892	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv879885	chr4:125791252-125852874	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv879886	chr4:125791252-125856465	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv470069	chr4:125807868-125850998	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv879887	chr4:125816783-125847530	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv879888	chr4:125816783-125850022	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv879889	chr4:125816783-125853748	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125821600-125824600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr4:125821600-125824800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:125821600-125824800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr4:125821600-125824800	Weak transcription	HMEC	breast
5	chr4:125822000-125824800	Weak transcription	NHEK	skin
6	chr4:125822400-125824800	Enhancers	Hela-S3	cervix
7	chr4:125822800-125824200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr4:125823200-125824800	Enhancers	Fetal Heart	heart
9	chr4:125823200-125824800	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr4:125823400-125824200	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr4:125823400-125824200	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr4:125823400-125824800	Enhancers	HSMMtube	muscle
13	chr4:125823400-125825800	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr4:125823600-125824200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr4:125823600-125824200	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr4:125823600-125824800	Weak transcription	Colon Smooth Muscle	Colon
17	chr4:125823600-125824800	Weak transcription	Fetal Kidney	kidney
18	chr4:125823800-125824800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr4:125823800-125824800	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr4:125823800-125824800	Weak transcription	Fetal Lung	lung
21	chr4:125823800-125824800	Weak transcription	Fetal Muscle Leg	muscle
22	chr4:125823800-125824800	Weak transcription	Fetal Stomach	stomach
23	chr4:125823800-125824800	Weak transcription	Psoas Muscle	Psoas
24	chr4:125823800-125825000	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr4:125823800-125825000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr4:125823800-125825000	Weak transcription	Rectal Smooth Muscle	rectum
27	chr4:125823800-125825200	Weak transcription	Pancreas	Pancrea
28	chr4:125823800-125826000	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr4:125824000-125824800	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr4:125824000-125825000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr4:125824000-125825000	Weak transcription	Pancreatic Islets	Pancreatic Islet

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