Variant report

Variant	rs10026376
Chromosome Location	chr4:125853109-125853110
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10012942	1.00[AMR][1000 genomes]
rs10022783	0.83[AMR][1000 genomes]
rs10026029	1.00[AMR][1000 genomes]
rs10033965	1.00[AMR][1000 genomes]
rs10212646	1.00[AMR][1000 genomes]
rs28373772	1.00[AMR][1000 genomes]
rs28461891	1.00[AMR][1000 genomes]
rs28526774	1.00[AMR][1000 genomes]
rs28559727	1.00[AMR][1000 genomes]
rs28561980	1.00[AMR][1000 genomes]
rs28878515	1.00[AMR][1000 genomes]
rs2893108	1.00[AMR][1000 genomes]
rs56234259	1.00[AMR][1000 genomes]
rs73845815	1.00[AMR][1000 genomes]
rs9307554	1.00[AMR][1000 genomes]
rs9990868	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011752	chr4:125708756-125932456	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv830050	chr4:125717858-125888563	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv879886	chr4:125791252-125856465	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv879889	chr4:125816783-125853748	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125844800-125860600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:125845600-125857600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr4:125847600-125854600	Weak transcription	Fetal Heart	heart
4	chr4:125851600-125853200	Enhancers	Hela-S3	cervix
5	chr4:125851600-125856200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr4:125852400-125853200	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr4:125852400-125853200	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr4:125852400-125853200	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr4:125852400-125857200	Weak transcription	HSMMtube	muscle
10	chr4:125852600-125854600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr4:125852600-125856200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr4:125852800-125853200	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr4:125852800-125857800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr4:125853000-125857400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr4:125853000-125857400	Weak transcription	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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