Variant report
| Variant | rs72914611 |
|---|---|
| Chromosome Location | chr4:125710328-125710329 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10012942 | 1.00[EUR][1000 genomes] |
| rs10026029 | 1.00[EUR][1000 genomes] |
| rs10471027 | 1.00[EUR][1000 genomes] |
| rs28526774 | 1.00[EUR][1000 genomes] |
| rs28561980 | 1.00[EUR][1000 genomes] |
| rs28636919 | 1.00[EUR][1000 genomes] |
| rs28683747 | 1.00[EUR][1000 genomes] |
| rs28836257 | 1.00[EUR][1000 genomes] |
| rs313893 | 1.00[EUR][1000 genomes] |
| rs313899 | 1.00[EUR][1000 genomes] |
| rs313900 | 1.00[EUR][1000 genomes] |
| rs536494 | 1.00[EUR][1000 genomes] |
| rs567082 | 1.00[EUR][1000 genomes] |
| rs72912782 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72912784 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72912785 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72912797 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72912800 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72912801 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72914614 | 1.00[AFR][1000 genomes] |
| rs72914618 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72914633 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9990868 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1011752 | chr4:125708756-125932456 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv1001338 | chr4:125708756-126103293 | Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:125709200-125710600 | Enhancers | Brain Germinal Matrix | brain |
