Variant report

Variant	rs28683747
Chromosome Location	chr4:125700719-125700720
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10004258	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10012942	1.00[EUR][1000 genomes]
rs10016531	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10020410	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10025388	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10025549	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10026029	1.00[EUR][1000 genomes]
rs10029144	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10471027	1.00[EUR][1000 genomes]
rs11098771	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11098772	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11934333	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11939370	0.85[ASN][1000 genomes]
rs1506553	0.88[ASN][1000 genomes]
rs1506554	0.88[ASN][1000 genomes]
rs28456115	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28492009	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28526774	1.00[EUR][1000 genomes]
rs28561980	1.00[EUR][1000 genomes]
rs28636919	1.00[EUR][1000 genomes]
rs28836257	1.00[EUR][1000 genomes]
rs313893	1.00[EUR][1000 genomes]
rs313899	1.00[EUR][1000 genomes]
rs313900	1.00[EUR][1000 genomes]
rs521639	1.00[EUR][1000 genomes]
rs536494	1.00[EUR][1000 genomes]
rs567082	1.00[EUR][1000 genomes]
rs57913129	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs72912782	1.00[EUR][1000 genomes]
rs72912784	1.00[EUR][1000 genomes]
rs72912785	1.00[EUR][1000 genomes]
rs72912797	1.00[EUR][1000 genomes]
rs72912800	1.00[EUR][1000 genomes]
rs72912801	1.00[EUR][1000 genomes]
rs72914611	1.00[EUR][1000 genomes]
rs72914618	1.00[EUR][1000 genomes]
rs72914633	1.00[EUR][1000 genomes]
rs9631739	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9884176	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9990868	1.00[EUR][1000 genomes]
rs9996211	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879882	chr4:125662969-125703938	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125699200-125701600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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