Variant report
| Variant | rs28492009 |
|---|---|
| Chromosome Location | chr4:125706275-125706276 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:125632846..125636211-chr4:125706157..125708453,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000151458 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs10004258 | 0.80[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs10013677 | 0.87[AFR][1000 genomes] |
| rs10016531 | 0.94[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10020410 | 0.80[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs10025388 | 0.80[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs10025549 | 0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10029144 | 0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11098771 | 0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11098772 | 0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11934333 | 0.80[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs11939370 | 0.85[ASN][1000 genomes] |
| rs1506553 | 0.88[ASN][1000 genomes] |
| rs1506554 | 0.88[ASN][1000 genomes] |
| rs28456115 | 0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28683747 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57913129 | 1.00[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs9631739 | 0.80[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs9884176 | 0.84[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs9996211 | 0.80[AMR][1000 genomes];0.85[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv437423 | chr4:125705944-125707773 | Weak transcription Enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:125705400-125706400 | Enhancers | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
