Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10004258	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10016531	0.85[ASN][1000 genomes]
rs10025388	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10025549	0.85[ASN][1000 genomes]
rs10029144	0.85[ASN][1000 genomes]
rs10031287	0.82[JPT][hapmap]
rs1021628	0.82[JPT][hapmap]
rs11098771	0.85[ASN][1000 genomes]
rs11098772	0.85[ASN][1000 genomes]
rs11729566	0.82[JPT][hapmap]
rs11729651	0.82[JPT][hapmap]
rs11934333	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11939370	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1564721	0.82[JPT][hapmap]
rs17008634	0.90[ASN][1000 genomes]
rs28456115	0.85[ASN][1000 genomes]
rs28492009	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs28683747	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4345200	1.00[EUR][1000 genomes]
rs57751888	1.00[EUR][1000 genomes]
rs57913129	0.80[AMR][1000 genomes]
rs6829814	0.90[ASN][1000 genomes]
rs724748	0.90[ASN][1000 genomes]
rs72683843	0.90[ASN][1000 genomes]
rs72918671	1.00[EUR][1000 genomes]
rs9631739	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9884176	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9994711	0.90[ASN][1000 genomes]
rs9996211	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011752	chr4:125708756-125932456	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv830050	chr4:125717858-125888563	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv879883	chr4:125732734-125767985	Enhancers ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125724600-125759600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:125755200-125763000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr4:125755600-125760800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search: