Variant report

Variant	rs11729651
Chromosome Location	chr4:125861631-125861632
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:125639869..125641790-chr4:125860741..125863223,2	MCF-7	breast:
2	chr4:125631771..125634938-chr4:125861010..125864557,5	MCF-7	breast:
3	chr4:125764608..125767385-chr4:125861503..125863790,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151458	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10031287	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1021628	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11722357	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11729566	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11732928	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11945096	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1384817	0.85[ASN][1000 genomes]
rs1483592	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1483599	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1483601	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1532493	0.80[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1553093	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1553094	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1553095	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1564721	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17184111	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17788496	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28477204	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28607791	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6824446	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72920861	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7695258	1.00[CHB][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011752	chr4:125708756-125932456	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv830050	chr4:125717858-125888563	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125856200-125866800	Enhancers	Hela-S3	cervix
2	chr4:125857600-125862600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr4:125858000-125865000	Weak transcription	Ovary	ovary
4	chr4:125858000-125868000	Weak transcription	Pancreas	Pancrea
5	chr4:125858200-125867800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr4:125859200-125862800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr4:125859200-125862800	Enhancers	NHDF-Ad	bronchial
8	chr4:125859200-125863200	Enhancers	Muscle Satellite Cultured Cells	--
9	chr4:125859400-125862400	Enhancers	HSMM	muscle
10	chr4:125859400-125862800	Enhancers	Osteobl	bone
11	chr4:125859400-125863000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr4:125859400-125870200	Weak transcription	Psoas Muscle	Psoas
13	chr4:125859600-125862600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr4:125860000-125863800	Enhancers	HUVEC	blood vessel
15	chr4:125860200-125862800	Enhancers	NHLF	lung
16	chr4:125860200-125863000	Enhancers	HMEC	breast
17	chr4:125860400-125862600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr4:125860400-125863000	Enhancers	NHEK	skin
19	chr4:125860600-125861800	Weak transcription	Fetal Muscle Leg	muscle
20	chr4:125860800-125862800	Enhancers	NH-A	brain
21	chr4:125861000-125862000	Enhancers	Fetal Heart	heart
22	chr4:125861000-125862400	Enhancers	Duodenum Smooth Muscle	Duodenum
23	chr4:125861000-125863800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr4:125861200-125861800	Enhancers	Adipose Nuclei	Adipose
25	chr4:125861200-125862000	Enhancers	Fetal Stomach	stomach
26	chr4:125861200-125862200	Enhancers	HSMMtube	muscle
27	chr4:125861200-125862600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr4:125861200-125866600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr4:125861400-125862000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr4:125861400-125862000	Enhancers	Rectal Smooth Muscle	rectum
31	chr4:125861400-125862000	Enhancers	Stomach Mucosa	stomach
32	chr4:125861400-125862000	Enhancers	Stomach Smooth Muscle	stomach
33	chr4:125861400-125862400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr4:125861600-125862000	Enhancers	HUES64 Cell Line	embryonic stem cell
35	chr4:125861600-125862000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr4:125861600-125862000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr4:125861600-125862000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr4:125861600-125862000	Enhancers	Fetal Kidney	kidney
39	chr4:125861600-125862800	Enhancers	A549	lung

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