Variant report

Variant	rs1483599
Chromosome Location	chr4:125853748-125853749
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10022194	0.84[GIH][hapmap];0.85[JPT][hapmap]
rs10031287	1.00[CHB][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1021628	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11722357	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11729566	1.00[CHB][hapmap];0.86[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11729651	1.00[CHB][hapmap];0.86[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11732928	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11945096	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1384817	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1483592	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.85[TSI][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1483601	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1532493	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1553093	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1553094	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1553095	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1564721	1.00[CHB][hapmap];0.86[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17184111	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17788496	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28477204	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28607791	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6824446	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72920861	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7657807	0.85[JPT][hapmap]
rs7695258	1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9307556	0.84[GIH][hapmap];0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011752	chr4:125708756-125932456	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv830050	chr4:125717858-125888563	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv879886	chr4:125791252-125856465	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv879889	chr4:125816783-125853748	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125844800-125860600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:125845600-125857600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr4:125847600-125854600	Weak transcription	Fetal Heart	heart
4	chr4:125851600-125856200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr4:125852400-125857200	Weak transcription	HSMMtube	muscle
6	chr4:125852600-125854600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr4:125852600-125856200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr4:125852800-125857800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr4:125853000-125857400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr4:125853000-125857400	Weak transcription	Osteobl	bone
11	chr4:125853200-125856000	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr4:125853200-125856000	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr4:125853200-125856000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr4:125853200-125856200	Weak transcription	Hela-S3	cervix
15	chr4:125853200-125859000	Weak transcription	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links