Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10022194	0.85[JPT][hapmap]
rs10031287	0.85[ASN][1000 genomes]
rs1021628	0.81[CEU][hapmap];0.86[JPT][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11722357	0.85[ASN][1000 genomes]
rs11729566	0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs11729651	0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs11732928	0.85[ASN][1000 genomes]
rs11945096	0.85[ASN][1000 genomes]
rs1483592	0.86[JPT][hapmap];0.81[TSI][hapmap];0.85[ASN][1000 genomes]
rs1483599	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1483601	0.81[CEU][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs1532493	0.81[CEU][hapmap];0.81[ASN][1000 genomes]
rs1553093	0.81[CEU][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs1553094	0.85[ASN][1000 genomes]
rs1553095	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1564721	0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs17184111	0.81[ASN][1000 genomes]
rs17788496	0.85[ASN][1000 genomes]
rs6824446	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72920861	0.85[ASN][1000 genomes]
rs7657807	0.85[JPT][hapmap]
rs7695258	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9307556	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011752	chr4:125708756-125932456	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv830050	chr4:125717858-125888563	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv879885	chr4:125791252-125852874	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv879886	chr4:125791252-125856465	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv879889	chr4:125816783-125853748	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125844800-125860600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:125845600-125857600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr4:125847600-125854600	Weak transcription	Fetal Heart	heart
4	chr4:125851600-125853000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr4:125851600-125853200	Enhancers	Hela-S3	cervix
6	chr4:125851600-125856200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr4:125851800-125853000	Enhancers	Muscle Satellite Cultured Cells	--
8	chr4:125851800-125853000	Enhancers	Osteobl	bone
9	chr4:125852400-125853200	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr4:125852400-125853200	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr4:125852400-125853200	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr4:125852400-125857200	Weak transcription	HSMMtube	muscle
13	chr4:125852600-125854600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr4:125852600-125856200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr4:125852800-125853200	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr4:125852800-125857800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

Quick Search: