Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:125766671..125769138-chr4:125772617..125775217,3	MCF-7	breast:
2	chr4:125764608..125767385-chr4:125861503..125863790,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10004258	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10016531	0.85[ASN][1000 genomes]
rs10020410	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10025388	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10025549	0.85[ASN][1000 genomes]
rs10029144	0.85[ASN][1000 genomes]
rs11098771	0.85[ASN][1000 genomes]
rs11098772	0.85[ASN][1000 genomes]
rs11934333	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11939370	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17008634	0.90[ASN][1000 genomes]
rs28456115	0.85[ASN][1000 genomes]
rs28492009	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs28683747	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4345200	1.00[EUR][1000 genomes]
rs57751888	1.00[EUR][1000 genomes]
rs57913129	0.84[AMR][1000 genomes]
rs6829814	0.90[ASN][1000 genomes]
rs724748	0.90[ASN][1000 genomes]
rs72683843	0.90[ASN][1000 genomes]
rs72918671	1.00[EUR][1000 genomes]
rs9631739	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9994711	0.90[ASN][1000 genomes]
rs9996211	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011752	chr4:125708756-125932456	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv830050	chr4:125717858-125888563	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv879883	chr4:125732734-125767985	Enhancers ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125763600-125767400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:125765800-125767800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:125767200-125768200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr4:125767200-125768400	Enhancers	NHEK	skin

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