Variant report

Variant	rs10016531
Chromosome Location	chr4:125728562-125728563
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10004258	0.85[ASN][1000 genomes]
rs10020410	0.85[ASN][1000 genomes]
rs10025388	0.85[ASN][1000 genomes]
rs10025549	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10029051	0.86[YRI][hapmap]
rs10029144	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11098771	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11098772	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11934333	0.85[ASN][1000 genomes]
rs11939370	0.85[ASN][1000 genomes]
rs1506553	0.88[ASN][1000 genomes]
rs1506554	0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs28456115	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28492009	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28683747	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57913129	0.94[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9631739	0.85[ASN][1000 genomes]
rs9884176	0.85[ASN][1000 genomes]
rs9996211	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011752	chr4:125708756-125932456	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv830050	chr4:125717858-125888563	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv15885	chr4:125727333-125730018	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125724600-125759600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:125726600-125731400	Weak transcription	Colon Smooth Muscle	Colon
3	chr4:125726800-125731200	Weak transcription	Rectal Smooth Muscle	rectum
4	chr4:125728200-125729400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr4:125728400-125729000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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