Variant report
| Variant | rs11098771 |
|---|---|
| Chromosome Location | chr4:125717968-125717969 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:125702474..125705309-chr4:125716481..125718670,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10004258 | 0.85[ASN][1000 genomes] |
| rs10013677 | 0.95[AFR][1000 genomes] |
| rs10016531 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10020410 | 0.85[ASN][1000 genomes] |
| rs10022194 | 0.82[JPT][hapmap] |
| rs10025388 | 0.85[ASN][1000 genomes] |
| rs10025549 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10029051 | 0.89[YRI][hapmap] |
| rs10029144 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11098772 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11934333 | 0.85[ASN][1000 genomes] |
| rs11939370 | 0.85[ASN][1000 genomes] |
| rs1506553 | 0.88[ASN][1000 genomes] |
| rs1506554 | 0.88[ASN][1000 genomes] |
| rs28456115 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28492009 | 0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28683747 | 0.94[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57913129 | 0.94[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7657807 | 0.82[JPT][hapmap] |
| rs9307556 | 0.82[JPT][hapmap] |
| rs9631739 | 0.85[ASN][1000 genomes] |
| rs9884176 | 0.85[ASN][1000 genomes] |
| rs9996211 | 0.85[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1011752 | chr4:125708756-125932456 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv1001338 | chr4:125708756-126103293 | Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv830050 | chr4:125717858-125888563 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:125717400-125718600 | Weak transcription | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
