Variant report
| Variant | rs11934333 |
|---|---|
| Chromosome Location | chr4:125748686-125748687 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10004258 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10016531 | 0.85[ASN][1000 genomes] |
| rs10020410 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10025388 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10025549 | 0.85[ASN][1000 genomes] |
| rs10029144 | 0.85[ASN][1000 genomes] |
| rs11098771 | 0.85[ASN][1000 genomes] |
| rs11098772 | 0.85[ASN][1000 genomes] |
| rs11939370 | 0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17008634 | 0.90[ASN][1000 genomes] |
| rs28456115 | 0.85[ASN][1000 genomes] |
| rs28492009 | 0.80[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs28683747 | 0.80[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs57913129 | 0.80[AMR][1000 genomes] |
| rs6829814 | 0.90[ASN][1000 genomes] |
| rs724748 | 0.90[ASN][1000 genomes] |
| rs72683843 | 0.90[ASN][1000 genomes] |
| rs9631739 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9884176 | 0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9994711 | 0.90[ASN][1000 genomes] |
| rs9996211 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1011752 | chr4:125708756-125932456 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv1001338 | chr4:125708756-126103293 | Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv830050 | chr4:125717858-125888563 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv879883 | chr4:125732734-125767985 | Enhancers ZNF genes & repeats Strong transcription Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:125724600-125759600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
