Variant report

Variant	rs10025549
Chromosome Location	chr4:125709967-125709968
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10004258	0.85[ASN][1000 genomes]
rs10013677	0.98[AFR][1000 genomes]
rs10016531	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10020410	0.85[ASN][1000 genomes]
rs10025388	0.85[ASN][1000 genomes]
rs10029144	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11098771	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11098772	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11934333	0.85[ASN][1000 genomes]
rs11939370	0.85[ASN][1000 genomes]
rs1506553	0.88[ASN][1000 genomes]
rs1506554	0.88[ASN][1000 genomes]
rs28456115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28492009	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28683747	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57913129	0.94[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9631739	0.85[ASN][1000 genomes]
rs9884176	0.85[ASN][1000 genomes]
rs9996211	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011752	chr4:125708756-125932456	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125709200-125710600	Enhancers	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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