Variant report

Variant	rs10029144
Chromosome Location	chr4:125700954-125700955
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10004258	0.85[ASN][1000 genomes]
rs10013677	0.92[AFR][1000 genomes]
rs10016531	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10020410	0.85[ASN][1000 genomes]
rs10025388	0.85[ASN][1000 genomes]
rs10025549	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11098771	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11098772	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11934333	0.85[ASN][1000 genomes]
rs11939370	0.85[ASN][1000 genomes]
rs1506553	0.88[ASN][1000 genomes]
rs1506554	0.88[ASN][1000 genomes]
rs28456115	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28492009	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28683747	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57913129	0.94[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9631739	0.85[ASN][1000 genomes]
rs9884176	0.85[ASN][1000 genomes]
rs9996211	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879882	chr4:125662969-125703938	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125699200-125701600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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