Variant report

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10016531	0.88[ASN][1000 genomes]
rs10022194	0.82[JPT][hapmap]
rs10025549	0.88[ASN][1000 genomes]
rs10029051	0.89[YRI][hapmap]
rs10029144	0.88[ASN][1000 genomes]
rs11098771	0.88[ASN][1000 genomes]
rs11098772	0.88[ASN][1000 genomes]
rs1506554	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17008634	0.86[ASN][1000 genomes]
rs28456115	0.88[ASN][1000 genomes]
rs28492009	0.88[ASN][1000 genomes]
rs28683747	0.88[ASN][1000 genomes]
rs57913129	0.81[ASN][1000 genomes]
rs6829814	0.86[ASN][1000 genomes]
rs724748	0.86[ASN][1000 genomes]
rs72682178	0.91[EUR][1000 genomes]
rs72682183	0.91[EUR][1000 genomes]
rs72682188	0.91[EUR][1000 genomes]
rs72682190	0.89[EUR][1000 genomes]
rs72682201	0.98[EUR][1000 genomes]
rs72683808	0.91[EUR][1000 genomes]
rs72683810	0.96[EUR][1000 genomes]
rs72683817	0.98[EUR][1000 genomes]
rs72683823	0.93[EUR][1000 genomes]
rs72683843	0.86[ASN][1000 genomes]
rs72683854	0.98[EUR][1000 genomes]
rs72683856	0.98[EUR][1000 genomes]
rs72683857	0.98[EUR][1000 genomes]
rs72683861	0.98[EUR][1000 genomes]
rs72683864	0.98[EUR][1000 genomes]
rs72683878	0.95[EUR][1000 genomes]
rs72683881	0.93[EUR][1000 genomes]
rs72683885	0.93[EUR][1000 genomes]
rs72683888	0.93[EUR][1000 genomes]
rs72683891	0.93[EUR][1000 genomes]
rs72683895	0.93[EUR][1000 genomes]
rs72683897	0.89[EUR][1000 genomes]
rs7657807	0.82[JPT][hapmap]
rs9307556	0.82[JPT][hapmap]
rs9994711	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011752	chr4:125708756-125932456	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv830050	chr4:125717858-125888563	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125724600-125759600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:125726000-125727200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr4:125726600-125731400	Weak transcription	Colon Smooth Muscle	Colon
4	chr4:125726800-125731200	Weak transcription	Rectal Smooth Muscle	rectum

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