Variant report
| Variant | rs72683891 |
|---|---|
| Chromosome Location | chr4:125790229-125790230 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs1506553 | 0.93[EUR][1000 genomes] |
| rs1506554 | 0.93[EUR][1000 genomes] |
| rs72680301 | 1.00[ASN][1000 genomes] |
| rs72682104 | 1.00[ASN][1000 genomes] |
| rs72682178 | 0.88[EUR][1000 genomes] |
| rs72682183 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72682188 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72682190 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72682201 | 0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72683808 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72683810 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72683817 | 0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72683823 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72683854 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72683856 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72683857 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72683861 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72683864 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72683878 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72683881 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72683885 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72683888 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72683895 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72683897 | 0.86[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs72683899 | 0.84[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1011752 | chr4:125708756-125932456 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv1001338 | chr4:125708756-126103293 | Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv830050 | chr4:125717858-125888563 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:125787200-125791600 | Enhancers | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
| 2 | chr4:125787400-125790800 | Enhancers | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
