Variant report

Variant	rs72683899
Chromosome Location	chr4:125803000-125803001
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10015272	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10018662	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10021315	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10021730	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10023306	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10027151	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10027239	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10470922	0.85[EUR][1000 genomes]
rs10470923	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10471028	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10518456	1.00[ASN][1000 genomes]
rs11934035	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13435791	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28360920	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28412826	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28445590	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28474678	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28527224	1.00[ASN][1000 genomes]
rs28573965	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28696122	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28839783	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56289879	1.00[ASN][1000 genomes]
rs57031928	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72682178	1.00[AFR][1000 genomes]
rs72682183	1.00[AFR][1000 genomes]
rs72682188	1.00[AFR][1000 genomes]
rs72682190	1.00[AFR][1000 genomes]
rs72682201	1.00[AFR][1000 genomes]
rs72683808	1.00[AFR][1000 genomes]
rs72683810	1.00[AFR][1000 genomes]
rs72683817	1.00[AFR][1000 genomes]
rs72683823	1.00[AFR][1000 genomes]
rs72683854	1.00[AFR][1000 genomes]
rs72683856	1.00[AFR][1000 genomes]
rs72683857	1.00[AFR][1000 genomes]
rs72683861	1.00[AFR][1000 genomes]
rs72683864	1.00[AFR][1000 genomes]
rs72683878	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs72683881	0.84[EUR][1000 genomes]
rs72683885	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs72683888	0.84[EUR][1000 genomes]
rs72683891	0.84[EUR][1000 genomes]
rs72683895	0.84[EUR][1000 genomes]
rs72683897	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7356274	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7356470	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9307553	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9307555	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9991412	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9993953	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011752	chr4:125708756-125932456	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv830050	chr4:125717858-125888563	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv879884	chr4:125791252-125841892	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv879885	chr4:125791252-125852874	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv879886	chr4:125791252-125856465	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125798200-125820800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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