Variant report

Variant	rs521639
Chromosome Location	chr4:125496948-125496949
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10001215	1.00[EUR][1000 genomes]
rs28535616	1.00[EUR][1000 genomes]
rs28683747	1.00[EUR][1000 genomes]
rs28713479	1.00[EUR][1000 genomes]
rs28836257	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs313893	1.00[EUR][1000 genomes]
rs313899	1.00[EUR][1000 genomes]
rs313900	1.00[EUR][1000 genomes]
rs536494	1.00[EUR][1000 genomes]
rs567082	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6829502	1.00[EUR][1000 genomes]
rs72912782	1.00[EUR][1000 genomes]
rs72912784	1.00[EUR][1000 genomes]
rs72912785	1.00[EUR][1000 genomes]
rs72912797	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868977	chr4:124841128-125550637	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125487600-125502400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:125496000-125499200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links