Variant report
| Variant | rs72912784 |
|---|---|
| Chromosome Location | chr4:125703834-125703835 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:125702474..125705309-chr4:125716481..125718670,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10012942 | 1.00[EUR][1000 genomes] |
| rs10026029 | 1.00[EUR][1000 genomes] |
| rs10471027 | 1.00[EUR][1000 genomes] |
| rs28526774 | 1.00[EUR][1000 genomes] |
| rs28561980 | 1.00[EUR][1000 genomes] |
| rs28636919 | 1.00[EUR][1000 genomes] |
| rs28683747 | 1.00[EUR][1000 genomes] |
| rs28836257 | 1.00[EUR][1000 genomes] |
| rs313893 | 1.00[EUR][1000 genomes] |
| rs313899 | 1.00[EUR][1000 genomes] |
| rs313900 | 1.00[EUR][1000 genomes] |
| rs521639 | 1.00[EUR][1000 genomes] |
| rs536494 | 1.00[EUR][1000 genomes] |
| rs567082 | 1.00[EUR][1000 genomes] |
| rs72912782 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72912785 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72912797 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72912800 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72912801 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72914611 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72914614 | 1.00[AFR][1000 genomes] |
| rs72914618 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72914633 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9990868 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv879882 | chr4:125662969-125703938 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:125703000-125705000 | Weak transcription | IMR90 fetal lung fibroblasts Cell Line | lung |
