Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10001215	1.00[EUR][1000 genomes]
rs28535616	1.00[EUR][1000 genomes]
rs28683747	1.00[EUR][1000 genomes]
rs28713479	1.00[EUR][1000 genomes]
rs28836257	1.00[EUR][1000 genomes]
rs313893	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs313899	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs313900	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs521639	1.00[EUR][1000 genomes]
rs567082	1.00[EUR][1000 genomes]
rs6829502	1.00[EUR][1000 genomes]
rs72912782	1.00[EUR][1000 genomes]
rs72912784	1.00[EUR][1000 genomes]
rs72912785	1.00[EUR][1000 genomes]
rs72912797	1.00[EUR][1000 genomes]
rs72912800	1.00[EUR][1000 genomes]
rs72912801	1.00[EUR][1000 genomes]
rs72914611	1.00[EUR][1000 genomes]
rs72914618	1.00[EUR][1000 genomes]
rs72914633	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868977	chr4:124841128-125550637	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125499600-125524400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:125506000-125538800	Weak transcription	Ovary	ovary
3	chr4:125516400-125525800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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