Variant report

Variant	rs6829502
Chromosome Location	chr4:125487330-125487331
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10001215	1.00[EUR][1000 genomes]
rs28535616	1.00[EUR][1000 genomes]
rs28713479	1.00[EUR][1000 genomes]
rs28836257	1.00[EUR][1000 genomes]
rs313893	1.00[EUR][1000 genomes]
rs313899	1.00[EUR][1000 genomes]
rs313900	1.00[EUR][1000 genomes]
rs521639	1.00[EUR][1000 genomes]
rs536494	1.00[EUR][1000 genomes]
rs567082	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868977	chr4:124841128-125550637	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv879880	chr4:125174817-125494547	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125486000-125491000	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr4:125486400-125487400	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr4:125486800-125487400	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr4:125486800-125487400	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr4:125487200-125487600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr4:125487200-125488600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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