Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10001215	1.00[EUR][1000 genomes]
rs28535616	1.00[EUR][1000 genomes]
rs28683747	1.00[EUR][1000 genomes]
rs28713479	1.00[EUR][1000 genomes]
rs313893	1.00[EUR][1000 genomes]
rs313899	1.00[EUR][1000 genomes]
rs313900	1.00[EUR][1000 genomes]
rs521639	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs536494	1.00[EUR][1000 genomes]
rs567082	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6829502	1.00[EUR][1000 genomes]
rs72912782	1.00[EUR][1000 genomes]
rs72912784	1.00[EUR][1000 genomes]
rs72912785	1.00[EUR][1000 genomes]
rs72912797	1.00[EUR][1000 genomes]
rs72912800	1.00[EUR][1000 genomes]
rs72912801	1.00[EUR][1000 genomes]
rs72914611	1.00[EUR][1000 genomes]
rs72914618	1.00[EUR][1000 genomes]
rs72914633	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868977	chr4:124841128-125550637	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125499600-125524400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:125503200-125511200	Weak transcription	Aorta	Aorta
3	chr4:125506000-125538800	Weak transcription	Ovary	ovary
4	chr4:125506600-125512600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr4:125507200-125514200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

Quick Search: