Variant report
| Variant | rs72912797 |
|---|---|
| Chromosome Location | chr4:125706469-125706470 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:125632846..125636211-chr4:125706157..125708453,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000151458 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10012942 | 1.00[EUR][1000 genomes] |
| rs10026029 | 1.00[EUR][1000 genomes] |
| rs10471027 | 1.00[EUR][1000 genomes] |
| rs28526774 | 1.00[EUR][1000 genomes] |
| rs28561980 | 1.00[EUR][1000 genomes] |
| rs28636919 | 1.00[EUR][1000 genomes] |
| rs28683747 | 1.00[EUR][1000 genomes] |
| rs28836257 | 1.00[EUR][1000 genomes] |
| rs313893 | 1.00[EUR][1000 genomes] |
| rs313899 | 1.00[EUR][1000 genomes] |
| rs313900 | 1.00[EUR][1000 genomes] |
| rs521639 | 1.00[EUR][1000 genomes] |
| rs536494 | 1.00[EUR][1000 genomes] |
| rs567082 | 1.00[EUR][1000 genomes] |
| rs72912782 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72912784 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72912785 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72912800 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72912801 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72914611 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72914614 | 1.00[AFR][1000 genomes] |
| rs72914618 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72914633 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9990868 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv437423 | chr4:125705944-125707773 | Weak transcription Enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:125706400-125707800 | Weak transcription | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
