Variant report

Variant	rs28504102
Chromosome Location	chr15:50872539-50872540
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:50872361..50874007-chr15:50875166..50877011,2	K562	blood:
2	chr15:50864188..50868322-chr15:50872346..50875460,4	MCF-7	breast:
3	chr15:50871076..50873819-chr15:50876627..50878202,2	MCF-7	breast:
4	chr15:50872498..50875116-chr15:50878753..50881368,3	K562	blood:
5	chr15:50865794..50868217-chr15:50870874..50873456,2	K562	blood:
6	chr15:50872361..50874197-chr15:50874784..50877011,2	K562	blood:

Variant related genes	Relation type
ENSG00000092439	Chromatin interaction

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs12101792	0.95[AFR][1000 genomes]
rs12102160	0.95[AFR][1000 genomes]
rs16963806	1.00[AFR][1000 genomes]
rs16963808	1.00[AFR][1000 genomes]
rs16963812	1.00[AFR][1000 genomes]
rs28422095	1.00[AFR][1000 genomes]
rs28452820	0.95[AFR][1000 genomes]
rs28464149	1.00[AFR][1000 genomes]
rs28478598	1.00[AFR][1000 genomes]
rs28575682	0.95[AFR][1000 genomes]
rs28613018	1.00[AFR][1000 genomes]
rs28699109	1.00[AFR][1000 genomes]
rs28763655	1.00[AFR][1000 genomes]
rs28806878	0.95[AFR][1000 genomes]
rs28828095	1.00[AFR][1000 genomes]
rs55996689	1.00[AFR][1000 genomes]
rs56277600	1.00[AFR][1000 genomes]
rs58579351	1.00[AFR][1000 genomes]
rs58700289	1.00[AFR][1000 genomes]
rs58899101	0.97[AFR][1000 genomes]
rs58959948	1.00[AFR][1000 genomes]
rs59036721	1.00[AFR][1000 genomes]
rs59929123	0.81[AFR][1000 genomes]
rs60192084	1.00[AFR][1000 genomes]
rs61216053	1.00[AFR][1000 genomes]
rs73395523	1.00[AFR][1000 genomes]
rs73395527	1.00[AFR][1000 genomes]
rs73395537	1.00[AFR][1000 genomes]
rs73395538	1.00[AFR][1000 genomes]
rs73395545	1.00[AFR][1000 genomes]
rs73395552	1.00[AFR][1000 genomes]
rs73395590	1.00[AFR][1000 genomes]
rs73397406	1.00[AFR][1000 genomes]
rs73397410	1.00[AFR][1000 genomes]
rs73397449	0.86[AFR][1000 genomes]
rs73397461	0.92[AFR][1000 genomes]
rs73397468	0.92[AFR][1000 genomes]
rs73397473	0.88[AFR][1000 genomes]
rs73408905	1.00[AFR][1000 genomes]
rs73408906	1.00[AFR][1000 genomes]
rs73408921	1.00[AFR][1000 genomes]
rs73408925	0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045456	chr15:50592472-51019873	Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	121 gene(s)	inside rSNPs	diseases
2	nsv948579	chr15:50645530-51045564	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
3	nsv1053966	chr15:50715572-51133186	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
4	nsv542383	chr15:50715572-51133186	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
5	nsv1043805	chr15:50715572-51208891	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
6	nsv542384	chr15:50715572-51208891	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
7	nsv1047443	chr15:50744781-51647023	Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
8	nsv1051990	chr15:50745814-51133186	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
9	nsv1054970	chr15:50761410-51036625	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
10	nsv457134	chr15:50770868-51184583	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
11	nsv471242	chr15:50770868-51184583	Genic enhancers ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
12	nsv569396	chr15:50770868-51184583	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
13	nsv457135	chr15:50770868-51189707	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
14	nsv569397	chr15:50770868-51189707	Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
15	nsv1048621	chr15:50775451-51115535	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
16	nsv1047039	chr15:50782070-51187804	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
17	nsv542385	chr15:50782070-51187804	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
18	nsv457136	chr15:50789125-51294995	Strong transcription ZNF genes & repeats Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
19	nsv569398	chr15:50789125-51294995	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
20	nsv431389	chr15:50795835-50979738	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
21	nsv1036081	chr15:50818569-51097229	Strong transcription Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
22	nsv1043387	chr15:50822035-50940979	Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
23	nsv1055112	chr15:50822035-51133186	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
24	nsv1050385	chr15:50843495-50949798	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
25	nsv1042372	chr15:50846461-51208891	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
26	nsv542386	chr15:50846461-51208891	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
27	nsv1055119	chr15:50861470-50900685	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50837000-50882800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:50846000-50950800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:50847000-50920600	Weak transcription	Aorta	Aorta
4	chr15:50848800-50894800	Strong transcription	Liver	Liver
5	chr15:50849000-50894600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:50849200-50874400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr15:50849200-50883600	Weak transcription	Pancreas	Pancrea
8	chr15:50849200-50883600	Weak transcription	Small Intestine	intestine
9	chr15:50849800-50872800	Strong transcription	Fetal Intestine Large	intestine
10	chr15:50850600-50872800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr15:50850800-50892000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr15:50851800-50936400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr15:50852000-50897400	Strong transcription	HUES64 Cell Line	embryonic stem cell
14	chr15:50852200-50890200	Weak transcription	Psoas Muscle	Psoas
15	chr15:50852200-50896800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr15:50852800-50879000	Strong transcription	Adipose Nuclei	Adipose
17	chr15:50852800-50887200	Strong transcription	Rectal Mucosa Donor 29	rectum
18	chr15:50852800-50888600	Strong transcription	HUES48 Cell Line	embryonic stem cell
19	chr15:50852800-50893200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr15:50853000-50872600	Strong transcription	Fetal Thymus	thymus
21	chr15:50853000-50872800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
22	chr15:50854600-50957400	Strong transcription	Primary T helper cells fromperipheralblood	blood
23	chr15:50855200-50879200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr15:50855600-50890200	Weak transcription	Fetal Brain Male	brain
25	chr15:50855600-50907200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr15:50855600-50919600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr15:50856400-50892600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr15:50857200-50875600	Strong transcription	NHDF-Ad	bronchial
29	chr15:50857400-50875000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr15:50857400-50922800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr15:50859400-50892000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
32	chr15:50859600-50888000	Strong transcription	Duodenum Smooth Muscle	Duodenum
33	chr15:50859600-50916600	Strong transcription	Primary T cells fromperipheralblood	blood
34	chr15:50860400-50875600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
35	chr15:50860600-50872800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr15:50860600-50872800	Strong transcription	Primary T cells from cord blood	blood
37	chr15:50860600-50872800	Strong transcription	Duodenum Mucosa	Duodenum
38	chr15:50860600-50888000	Strong transcription	HUES6 Cell Line	embryonic stem cell
39	chr15:50860800-50873000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr15:50860800-50891800	Strong transcription	Primary T helper cells PMA-I stimulated	--
41	chr15:50861000-50893600	Strong transcription	Placenta	Placenta
42	chr15:50861400-50878800	Strong transcription	Stomach Smooth Muscle	stomach
43	chr15:50861400-50879000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr15:50861600-50873000	Strong transcription	HSMM	muscle
45	chr15:50861600-50892200	Strong transcription	Dnd41	blood
46	chr15:50862800-50891000	Strong transcription	A549	lung
47	chr15:50863800-50875000	Strong transcription	Rectal Mucosa Donor 31	rectum
48	chr15:50864000-50872800	Strong transcription	Left Ventricle	heart
49	chr15:50864000-50872800	Strong transcription	HSMMtube	muscle
50	chr15:50864000-50907400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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