Variant report

Variant	rs60192084
Chromosome Location	chr15:50923441-50923442
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:50916413..50918620-chr15:50919827..50924015,3	K562	blood:

Variant related genes	Relation type
ENSG00000092439	Chromatin interaction

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs12101792	0.95[AFR][1000 genomes]
rs12102160	0.95[AFR][1000 genomes]
rs16963806	1.00[AFR][1000 genomes]
rs16963808	1.00[AFR][1000 genomes]
rs16963812	1.00[AFR][1000 genomes]
rs28422095	1.00[AFR][1000 genomes]
rs28452820	0.95[AFR][1000 genomes]
rs28464149	1.00[AFR][1000 genomes]
rs28478598	1.00[AFR][1000 genomes]
rs28504102	1.00[AFR][1000 genomes]
rs28575682	0.95[AFR][1000 genomes]
rs28613018	1.00[AFR][1000 genomes]
rs28699109	1.00[AFR][1000 genomes]
rs28763655	1.00[AFR][1000 genomes]
rs28806878	0.95[AFR][1000 genomes]
rs28828095	1.00[AFR][1000 genomes]
rs55996689	1.00[AFR][1000 genomes]
rs56277600	1.00[AFR][1000 genomes]
rs58579351	1.00[AFR][1000 genomes]
rs58700289	1.00[AFR][1000 genomes]
rs58899101	0.97[AFR][1000 genomes]
rs58959948	1.00[AFR][1000 genomes]
rs59036721	1.00[AFR][1000 genomes]
rs59929123	0.81[AFR][1000 genomes]
rs61216053	1.00[AFR][1000 genomes]
rs73395523	1.00[AFR][1000 genomes]
rs73395527	1.00[AFR][1000 genomes]
rs73395537	1.00[AFR][1000 genomes]
rs73395538	1.00[AFR][1000 genomes]
rs73395545	1.00[AFR][1000 genomes]
rs73395552	1.00[AFR][1000 genomes]
rs73395590	1.00[AFR][1000 genomes]
rs73397406	1.00[AFR][1000 genomes]
rs73397410	1.00[AFR][1000 genomes]
rs73397449	0.86[AFR][1000 genomes]
rs73397461	0.92[AFR][1000 genomes]
rs73397468	0.92[AFR][1000 genomes]
rs73397473	0.88[AFR][1000 genomes]
rs73408905	1.00[AFR][1000 genomes]
rs73408906	1.00[AFR][1000 genomes]
rs73408921	1.00[AFR][1000 genomes]
rs73408925	0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:30 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045456	chr15:50592472-51019873	Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	121 gene(s)	inside rSNPs	diseases
2	nsv948579	chr15:50645530-51045564	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
3	nsv1053966	chr15:50715572-51133186	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
4	nsv542383	chr15:50715572-51133186	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
5	nsv1043805	chr15:50715572-51208891	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
6	nsv542384	chr15:50715572-51208891	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
7	nsv1047443	chr15:50744781-51647023	Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
8	nsv1051990	chr15:50745814-51133186	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
9	nsv1054970	chr15:50761410-51036625	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
10	nsv457134	chr15:50770868-51184583	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
11	nsv471242	chr15:50770868-51184583	Genic enhancers ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
12	nsv569396	chr15:50770868-51184583	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
13	nsv457135	chr15:50770868-51189707	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
14	nsv569397	chr15:50770868-51189707	Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
15	nsv1048621	chr15:50775451-51115535	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
16	nsv1047039	chr15:50782070-51187804	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
17	nsv542385	chr15:50782070-51187804	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
18	nsv457136	chr15:50789125-51294995	Strong transcription ZNF genes & repeats Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
19	nsv569398	chr15:50789125-51294995	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
20	nsv431389	chr15:50795835-50979738	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
21	nsv1036081	chr15:50818569-51097229	Strong transcription Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
22	nsv1043387	chr15:50822035-50940979	Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
23	nsv1055112	chr15:50822035-51133186	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
24	nsv1050385	chr15:50843495-50949798	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
25	nsv1042372	chr15:50846461-51208891	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
26	nsv542386	chr15:50846461-51208891	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
27	nsv569399	chr15:50874964-51562198	Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
28	nsv569400	chr15:50874964-51767265	ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
29	nsv1048114	chr15:50885156-50949798	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
30	nsv1051400	chr15:50890333-51046283	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50846000-50950800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:50851800-50936400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr15:50854600-50957400	Strong transcription	Primary T helper cells fromperipheralblood	blood
4	chr15:50869800-50967600	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr15:50871600-50957600	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr15:50880400-50935800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr15:50890800-50929400	Weak transcription	Fetal Brain Male	brain
8	chr15:50891000-50933200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr15:50894400-50955600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr15:50895000-50954400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr15:50895200-50959000	Strong transcription	Liver	Liver
12	chr15:50895400-50934400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr15:50895400-50944800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr15:50906400-50977400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr15:50908000-50961800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr15:50908600-50936400	Strong transcription	HUES48 Cell Line	embryonic stem cell
17	chr15:50910600-50923600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr15:50910800-50936200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
19	chr15:50910800-50943800	Strong transcription	Primary T helper cells PMA-I stimulated	--
20	chr15:50911000-50925200	Strong transcription	Hela-S3	cervix
21	chr15:50913000-50937800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
22	chr15:50913400-50944200	Strong transcription	Duodenum Mucosa	Duodenum
23	chr15:50913800-50936800	Strong transcription	HUES6 Cell Line	embryonic stem cell
24	chr15:50914000-50927000	Strong transcription	Dnd41	blood
25	chr15:50914200-50927200	Weak transcription	Small Intestine	intestine
26	chr15:50914600-50923800	Strong transcription	HSMM	muscle
27	chr15:50915800-50936800	Strong transcription	HUES64 Cell Line	embryonic stem cell
28	chr15:50915800-50943600	Strong transcription	Rectal Mucosa Donor 29	rectum
29	chr15:50916000-50946200	Strong transcription	Primary B cells from peripheral blood	blood
30	chr15:50916000-50959200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr15:50916600-50936200	Strong transcription	Rectal Mucosa Donor 31	rectum
32	chr15:50917200-50924800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr15:50917400-50946600	Strong transcription	Primary T cells fromperipheralblood	blood
34	chr15:50917600-50923600	Strong transcription	GM12878-XiMat	blood
35	chr15:50917600-50924200	Strong transcription	Fetal Thymus	thymus
36	chr15:50917600-50957400	Strong transcription	Fetal Intestine Large	intestine
37	chr15:50917800-50926800	Strong transcription	Primary B cells from cord blood	blood
38	chr15:50917800-50938600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr15:50918600-50923600	Strong transcription	HepG2	liver
40	chr15:50918600-50923800	Strong transcription	Brain Hippocampus Middle	brain
41	chr15:50918600-50931000	Strong transcription	Placenta	Placenta
42	chr15:50918600-50936200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr15:50918600-50951600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr15:50918800-50928600	Strong transcription	Fetal Lung	lung
45	chr15:50918800-50932600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr15:50918800-50936600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
47	chr15:50918800-50950000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr15:50918800-50951200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
49	chr15:50919000-50925400	Strong transcription	Primary T cells from cord blood	blood
50	chr15:50919000-50930200	Strong transcription	Skeletal Muscle Female	skeletal muscle

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