Variant report

Variant	rs28504638
Chromosome Location	chr4:79671441-79671442
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:79670306..79672761-chr4:79674776..79676315,2	K562	blood:
2	chr4:79671149..79677345-chr4:79694159..79700053,8	K562	blood:
3	chr4:79666351..79669068-chr4:79669581..79671853,2	K562	blood:

Variant related genes	Relation type
ENSG00000260278	Chromatin interaction
ENSG00000138756	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17003449	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7661139	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1803379	chr4:79661618-79704210	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv1792021	chr4:79661618-79784245	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79668400-79671600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr4:79668600-79671600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr4:79669000-79671600	Enhancers	Osteobl	bone
4	chr4:79669400-79675400	Enhancers	Primary B cells from peripheral blood	blood
5	chr4:79669800-79672600	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr4:79670200-79671600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr4:79670200-79675400	Enhancers	Primary B cells from cord blood	blood
8	chr4:79670400-79671800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr4:79670400-79671800	Enhancers	HSMMtube	muscle
10	chr4:79670400-79671800	Enhancers	K562	blood
11	chr4:79670400-79672200	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr4:79670600-79671600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr4:79670600-79671600	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr4:79670600-79671800	Enhancers	Duodenum Smooth Muscle	Duodenum
15	chr4:79670600-79672000	Flanking Active TSS	GM12878-XiMat	blood
16	chr4:79670600-79672000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
17	chr4:79670600-79672200	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr4:79670600-79672200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr4:79670600-79672400	Enhancers	Primary hematopoietic stem cells	blood
20	chr4:79670800-79671600	Weak transcription	Left Ventricle	heart
21	chr4:79670800-79671600	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr4:79670800-79671600	Weak transcription	Small Intestine	intestine
23	chr4:79670800-79672200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr4:79671200-79671600	Flanking Active TSS	NHDF-Ad	bronchial
25	chr4:79671200-79671800	Flanking Active TSS	Fetal Heart	heart
26	chr4:79671200-79673400	Enhancers	Fetal Intestine Small	intestine
27	chr4:79671400-79672000	Enhancers	Duodenum Mucosa	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links