Variant report

Variant	rs17003449
Chromosome Location	chr4:79674395-79674396
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10518204	1.00[GIH][hapmap]
rs17003461	1.00[GIH][hapmap]
rs17003474	1.00[GIH][hapmap]
rs1816184	1.00[GIH][hapmap]
rs28504638	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7658187	1.00[GIH][hapmap]
rs7661139	0.94[ASW][hapmap];1.00[GIH][hapmap];0.91[LWK][hapmap];0.85[MKK][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1803379	chr4:79661618-79704210	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv1792021	chr4:79661618-79784245	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79669400-79675400	Enhancers	Primary B cells from peripheral blood	blood
2	chr4:79670200-79675400	Enhancers	Primary B cells from cord blood	blood
3	chr4:79671600-79674600	Enhancers	NHDF-Ad	bronchial
4	chr4:79671800-79682600	Weak transcription	K562	blood
5	chr4:79672600-79674400	Enhancers	GM12878-XiMat	blood
6	chr4:79672800-79677800	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr4:79673400-79678800	Weak transcription	Fetal Intestine Small	intestine
8	chr4:79673800-79674600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr4:79674200-79674400	Enhancers	Psoas Muscle	Psoas

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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