Variant report

Variant	rs10518204
Chromosome Location	chr4:79710989-79710990
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:79703185..79706477-chr4:79708541..79712567,5	MCF-7	breast:
2	chr4:79697024..79700510-chr4:79708103..79713091,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000260278	Chromatin interaction
ENSG00000138756	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10011360	1.00[AMR][1000 genomes]
rs10022801	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10028888	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10031149	1.00[AMR][1000 genomes]
rs10032333	1.00[AMR][1000 genomes]
rs10033281	1.00[AMR][1000 genomes]
rs10440396	1.00[AMR][1000 genomes]
rs10440397	1.00[AMR][1000 genomes]
rs10518203	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17003449	1.00[GIH][hapmap]
rs17003461	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17003474	1.00[GIH][hapmap]
rs17003486	1.00[MEX][hapmap]
rs1816184	1.00[GIH][hapmap]
rs28366415	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28377257	1.00[AMR][1000 genomes]
rs28423984	1.00[AMR][1000 genomes]
rs28440150	1.00[AMR][1000 genomes]
rs28451964	1.00[AMR][1000 genomes]
rs28452521	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28456317	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28479356	1.00[AMR][1000 genomes]
rs28551149	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28580580	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28674732	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28676399	1.00[AMR][1000 genomes]
rs28681258	1.00[AMR][1000 genomes]
rs28689013	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28705943	1.00[AMR][1000 genomes]
rs28708661	1.00[AMR][1000 genomes]
rs28708924	1.00[AMR][1000 genomes]
rs28709346	1.00[AMR][1000 genomes]
rs28722195	1.00[AMR][1000 genomes]
rs28781350	1.00[AMR][1000 genomes]
rs28818508	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28896313	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7658187	1.00[GIH][hapmap]
rs7661139	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs9991385	1.00[AMR][1000 genomes]
rs9991672	1.00[AMR][1000 genomes]
rs9994104	1.00[AMR][1000 genomes]
rs9995485	1.00[AMR][1000 genomes]
rs9998371	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1792021	chr4:79661618-79784245	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79699000-79717200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr4:79699400-79722600	Weak transcription	Fetal Thymus	thymus
3	chr4:79700200-79714200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:79700200-79732800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr4:79700400-79718200	Weak transcription	Duodenum Mucosa	Duodenum
6	chr4:79701200-79711600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr4:79701600-79719200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr4:79702000-79731200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr4:79703000-79720800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr4:79703200-79720800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr4:79703400-79720800	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr4:79704200-79712600	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr4:79704200-79713200	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr4:79705600-79731200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr4:79705800-79714600	Weak transcription	HUVEC	blood vessel
16	chr4:79706000-79720000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr4:79706000-79720200	Weak transcription	Primary T cells from cord blood	blood
18	chr4:79706000-79720200	Weak transcription	NHEK	skin
19	chr4:79706000-79720800	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr4:79706200-79718000	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr4:79706200-79718200	Weak transcription	Fetal Lung	lung
22	chr4:79706200-79722200	Weak transcription	HSMM	muscle
23	chr4:79706600-79711800	Weak transcription	Primary hematopoietic stem cells	blood
24	chr4:79706600-79722800	Weak transcription	Brain Substantia Nigra	brain
25	chr4:79707000-79721000	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr4:79707400-79715800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr4:79707600-79715000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr4:79707600-79721800	Weak transcription	Fetal Muscle Leg	muscle
29	chr4:79707800-79715200	Weak transcription	Left Ventricle	heart
30	chr4:79707800-79715800	Weak transcription	Dnd41	blood
31	chr4:79707800-79716000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr4:79707800-79720800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr4:79707800-79720800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr4:79708200-79719000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr4:79708400-79711600	Enhancers	Brain Hippocampus Middle	brain
36	chr4:79708800-79719000	Weak transcription	Right Atrium	heart
37	chr4:79709000-79720800	Weak transcription	NHLF	lung
38	chr4:79709200-79717000	Weak transcription	Brain Cingulate Gyrus	brain
39	chr4:79709200-79723800	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr4:79709200-79731200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr4:79709400-79718200	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr4:79709400-79724000	Weak transcription	Fetal Intestine Small	intestine
43	chr4:79709600-79712200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr4:79709600-79712600	Weak transcription	Primary B cells from cord blood	blood
45	chr4:79709600-79716000	Weak transcription	NHDF-Ad	bronchial
46	chr4:79709600-79718400	Weak transcription	Fetal Heart	heart
47	chr4:79709600-79720600	Weak transcription	Osteobl	bone
48	chr4:79709600-79721400	Weak transcription	Brain Anterior Caudate	brain
49	chr4:79710000-79720200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr4:79710000-79720600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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