Variant report

Variant	rs28722195
Chromosome Location	chr4:79689977-79689978
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:79686100..79693924-chr4:79694940..79698947,11	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138756	Chromatin interaction
ENSG00000260278	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10011360	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10022801	1.00[AMR][1000 genomes]
rs10028888	1.00[AMR][1000 genomes]
rs10031149	1.00[AMR][1000 genomes]
rs10032333	1.00[AMR][1000 genomes]
rs10033281	1.00[AMR][1000 genomes]
rs10440396	1.00[AMR][1000 genomes]
rs10440397	1.00[AMR][1000 genomes]
rs10518203	1.00[AMR][1000 genomes]
rs10518204	1.00[AMR][1000 genomes]
rs17003461	1.00[AMR][1000 genomes]
rs28366415	1.00[AMR][1000 genomes]
rs28377257	1.00[AMR][1000 genomes]
rs28423984	1.00[AMR][1000 genomes]
rs28440150	1.00[AMR][1000 genomes]
rs28451964	1.00[AMR][1000 genomes]
rs28452521	1.00[AMR][1000 genomes]
rs28456317	1.00[AMR][1000 genomes]
rs28479356	1.00[AMR][1000 genomes]
rs28551149	1.00[AMR][1000 genomes]
rs28580580	1.00[AMR][1000 genomes]
rs28674732	1.00[AMR][1000 genomes]
rs28676399	1.00[AMR][1000 genomes]
rs28681258	1.00[AMR][1000 genomes]
rs28689013	1.00[AMR][1000 genomes]
rs28705943	1.00[AMR][1000 genomes]
rs28708661	1.00[AMR][1000 genomes]
rs28708924	1.00[AMR][1000 genomes]
rs28709346	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28781350	1.00[AMR][1000 genomes]
rs28818508	1.00[AMR][1000 genomes]
rs28896313	1.00[AMR][1000 genomes]
rs9991385	1.00[AMR][1000 genomes]
rs9991672	1.00[AMR][1000 genomes]
rs9994104	1.00[AMR][1000 genomes]
rs9995485	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1803379	chr4:79661618-79704210	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv1792021	chr4:79661618-79784245	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79685800-79695400	Enhancers	K562	blood
2	chr4:79686800-79691600	Enhancers	Fetal Intestine Large	intestine
3	chr4:79687400-79696000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr4:79687600-79696200	Weak transcription	Osteobl	bone
5	chr4:79688400-79690200	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr4:79688600-79690800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr4:79688600-79691600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr4:79688600-79692000	Enhancers	Fetal Intestine Small	intestine
9	chr4:79689000-79691600	Enhancers	NHLF	lung
10	chr4:79689200-79691000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr4:79689200-79691200	Enhancers	Dnd41	blood
12	chr4:79689200-79691600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr4:79689400-79690000	Enhancers	HMEC	breast
14	chr4:79689400-79691000	Enhancers	Muscle Satellite Cultured Cells	--
15	chr4:79689400-79691000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr4:79689400-79691000	Enhancers	Fetal Thymus	thymus
17	chr4:79689400-79691000	Enhancers	Thymus	Thymus
18	chr4:79689400-79691000	Enhancers	NHDF-Ad	bronchial
19	chr4:79689400-79691800	Enhancers	HUVEC	blood vessel
20	chr4:79689600-79690400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr4:79689600-79691000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr4:79689600-79691600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr4:79689600-79691600	Enhancers	NHEK	skin
24	chr4:79689600-79693400	Weak transcription	GM12878-XiMat	blood
25	chr4:79689800-79690000	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr4:79689800-79690800	Weak transcription	Fetal Heart	heart
27	chr4:79689800-79690800	Weak transcription	Left Ventricle	heart
28	chr4:79689800-79691000	Enhancers	Primary T cells from cord blood	blood
29	chr4:79689800-79692200	Weak transcription	Esophagus	oesophagus
30	chr4:79689800-79695200	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr4:79689800-79696000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr4:79689800-79696400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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