Variant report

Variant	rs28681258
Chromosome Location	chr4:79863276-79863277
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10011360	1.00[AMR][1000 genomes]
rs10022801	1.00[AMR][1000 genomes]
rs10028888	1.00[AMR][1000 genomes]
rs10031149	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10032333	1.00[AMR][1000 genomes]
rs10033281	1.00[AMR][1000 genomes]
rs10440396	1.00[AMR][1000 genomes]
rs10440397	1.00[AMR][1000 genomes]
rs10518203	1.00[AMR][1000 genomes]
rs10518204	1.00[AMR][1000 genomes]
rs17003461	1.00[AMR][1000 genomes]
rs28366415	1.00[AMR][1000 genomes]
rs28377257	1.00[AMR][1000 genomes]
rs28423984	1.00[AMR][1000 genomes]
rs28440150	1.00[AMR][1000 genomes]
rs28451964	1.00[AMR][1000 genomes]
rs28452521	1.00[AMR][1000 genomes]
rs28456317	1.00[AMR][1000 genomes]
rs28479356	1.00[AMR][1000 genomes]
rs28551149	1.00[AMR][1000 genomes]
rs28580580	1.00[AMR][1000 genomes]
rs28674732	1.00[AMR][1000 genomes]
rs28676399	1.00[AMR][1000 genomes]
rs28689013	1.00[AMR][1000 genomes]
rs28705943	1.00[AMR][1000 genomes]
rs28708661	1.00[AMR][1000 genomes]
rs28708924	1.00[AMR][1000 genomes]
rs28709346	1.00[AMR][1000 genomes]
rs28722195	1.00[AMR][1000 genomes]
rs28781350	1.00[AMR][1000 genomes]
rs28818508	1.00[AMR][1000 genomes]
rs28896313	1.00[AMR][1000 genomes]
rs9991385	1.00[AMR][1000 genomes]
rs9991672	1.00[AMR][1000 genomes]
rs9994104	1.00[AMR][1000 genomes]
rs9995485	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879504	chr4:79759796-79874275	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv829979	chr4:79819168-80019159	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1000907	chr4:79838948-80224764	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79860800-79864200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:79861400-79863600	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr4:79861400-79863600	Enhancers	Fetal Intestine Small	intestine
4	chr4:79861600-79863400	Enhancers	Duodenum Mucosa	Duodenum
5	chr4:79861600-79864000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr4:79861600-79864200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr4:79863000-79865200	Weak transcription	K562	blood
8	chr4:79863200-79865400	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr4:79863200-79865600	Enhancers	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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