Variant report

Variant	rs28440150
Chromosome Location	chr4:79669209-79669210
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10011360	1.00[AMR][1000 genomes]
rs10022801	1.00[AMR][1000 genomes]
rs10028888	1.00[AMR][1000 genomes]
rs10031149	1.00[AMR][1000 genomes]
rs10032333	1.00[AMR][1000 genomes]
rs10033281	1.00[AMR][1000 genomes]
rs10440396	1.00[AMR][1000 genomes]
rs10440397	1.00[AMR][1000 genomes]
rs10518203	1.00[AMR][1000 genomes]
rs10518204	1.00[AMR][1000 genomes]
rs17003461	1.00[AMR][1000 genomes]
rs28366415	1.00[AMR][1000 genomes]
rs28377257	1.00[AMR][1000 genomes]
rs28423984	1.00[AMR][1000 genomes]
rs28451964	1.00[AMR][1000 genomes]
rs28452521	1.00[AMR][1000 genomes]
rs28456317	1.00[AMR][1000 genomes]
rs28479356	1.00[AMR][1000 genomes]
rs28551149	1.00[AMR][1000 genomes]
rs28580580	1.00[AMR][1000 genomes]
rs28674732	1.00[AMR][1000 genomes]
rs28676399	1.00[AMR][1000 genomes]
rs28681258	1.00[AMR][1000 genomes]
rs28689013	1.00[AMR][1000 genomes]
rs28705943	1.00[AMR][1000 genomes]
rs28708661	1.00[AMR][1000 genomes]
rs28708924	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28709346	1.00[AMR][1000 genomes]
rs28722195	1.00[AMR][1000 genomes]
rs28781350	1.00[AMR][1000 genomes]
rs28818508	1.00[AMR][1000 genomes]
rs28896313	1.00[AMR][1000 genomes]
rs9991385	1.00[AMR][1000 genomes]
rs9991672	1.00[AMR][1000 genomes]
rs9994104	1.00[AMR][1000 genomes]
rs9995485	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1803379	chr4:79661618-79704210	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv1792021	chr4:79661618-79784245	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79660400-79669400	Weak transcription	Primary B cells from peripheral blood	blood
2	chr4:79668000-79669400	Enhancers	NHDF-Ad	bronchial
3	chr4:79668200-79670000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:79668400-79669800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr4:79668400-79670400	Weak transcription	K562	blood
6	chr4:79668400-79671600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:79668600-79669400	Enhancers	HSMMtube	muscle
8	chr4:79668600-79671600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr4:79669000-79670200	Enhancers	NHLF	lung
10	chr4:79669000-79670600	Enhancers	Fetal Heart	heart
11	chr4:79669000-79671600	Enhancers	Osteobl	bone
12	chr4:79669200-79669600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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