Variant report

Variant	rs10440397
Chromosome Location	chr4:79672080-79672081
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10011360	1.00[AMR][1000 genomes]
rs10022801	1.00[AMR][1000 genomes]
rs10028888	1.00[AMR][1000 genomes]
rs10031149	1.00[AMR][1000 genomes]
rs10032333	1.00[AMR][1000 genomes]
rs10033281	1.00[AMR][1000 genomes]
rs10440396	1.00[AMR][1000 genomes]
rs10518203	1.00[AMR][1000 genomes]
rs10518204	1.00[AMR][1000 genomes]
rs17003461	1.00[AMR][1000 genomes]
rs28366415	1.00[AMR][1000 genomes]
rs28377257	1.00[AMR][1000 genomes]
rs28423984	1.00[AMR][1000 genomes]
rs28440150	1.00[AMR][1000 genomes]
rs28451964	1.00[AMR][1000 genomes]
rs28452521	1.00[AMR][1000 genomes]
rs28456317	1.00[AMR][1000 genomes]
rs28479356	1.00[AMR][1000 genomes]
rs28551149	1.00[AMR][1000 genomes]
rs28580580	1.00[AMR][1000 genomes]
rs28674732	1.00[AMR][1000 genomes]
rs28676399	1.00[AMR][1000 genomes]
rs28681258	1.00[AMR][1000 genomes]
rs28689013	1.00[AMR][1000 genomes]
rs28705943	1.00[AMR][1000 genomes]
rs28708661	1.00[AMR][1000 genomes]
rs28708924	1.00[AMR][1000 genomes]
rs28709346	1.00[AMR][1000 genomes]
rs28722195	1.00[AMR][1000 genomes]
rs28781350	1.00[AMR][1000 genomes]
rs28818508	1.00[AMR][1000 genomes]
rs28896313	1.00[AMR][1000 genomes]
rs9991385	1.00[AMR][1000 genomes]
rs9991672	1.00[AMR][1000 genomes]
rs9994104	1.00[AMR][1000 genomes]
rs9995485	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1803379	chr4:79661618-79704210	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv1792021	chr4:79661618-79784245	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
3	esv2424456	chr4:79671998-79673585	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79669400-79675400	Enhancers	Primary B cells from peripheral blood	blood
2	chr4:79669800-79672600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr4:79670200-79675400	Enhancers	Primary B cells from cord blood	blood
4	chr4:79670400-79672200	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr4:79670600-79672200	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr4:79670600-79672200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr4:79670600-79672400	Enhancers	Primary hematopoietic stem cells	blood
8	chr4:79670800-79672200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr4:79671200-79673400	Enhancers	Fetal Intestine Small	intestine
10	chr4:79671600-79672400	Enhancers	Small Intestine	intestine
11	chr4:79671600-79673800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr4:79671600-79674600	Enhancers	NHDF-Ad	bronchial
13	chr4:79671800-79672200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr4:79671800-79672800	Enhancers	Fetal Intestine Large	intestine
15	chr4:79671800-79673200	Enhancers	Liver	Liver
16	chr4:79671800-79673600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr4:79671800-79682600	Weak transcription	K562	blood
18	chr4:79672000-79672400	Enhancers	GM12878-XiMat	blood
19	chr4:79672000-79672800	Enhancers	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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