Variant report

Variant	rs9998371
Chromosome Location	chr4:79609119-79609120
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:79603993..79609685-chr4:79610850..79614972,9	K562	blood:
2	chr4:79608933..79617994-chr4:79691426..79702696,23	K562	blood:
3	chr4:79602819..79606934-chr4:79608237..79614104,8	K562	blood:
4	chr4:79573896..79576451-chr4:79609109..79611530,2	K562	blood:
5	chr4:79578638..79580494-chr4:79607559..79609986,2	K562	blood:
6	chr4:79603191..79606883-chr4:79607148..79610716,4	K562	blood:
7	chr4:79608764..79617994-chr4:79689698..79699789,21	K562	blood:
8	chr4:79582164..79584750-chr4:79606523..79609231,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10003289	0.88[YRI][hapmap]
rs10019277	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10021286	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10029168	0.87[AFR][1000 genomes]
rs10518204	1.00[MEX][hapmap]
rs17003461	1.00[MEX][hapmap]
rs28538252	0.95[AFR][1000 genomes]
rs28665908	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28713672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72861208	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72861215	0.95[AFR][1000 genomes]
rs72861218	0.95[AFR][1000 genomes]
rs72861224	0.95[AFR][1000 genomes]
rs72861226	0.95[AFR][1000 genomes]
rs72861231	0.97[AFR][1000 genomes]
rs72861238	1.00[AFR][1000 genomes]
rs72861261	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7661139	1.00[MEX][hapmap]
rs7668993	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79604200-79610000	Weak transcription	Fetal Intestine Large	intestine
2	chr4:79605800-79612200	Weak transcription	Fetal Intestine Small	intestine
3	chr4:79606000-79609600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:79606000-79609800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr4:79606000-79610200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr4:79606000-79611800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr4:79606200-79609200	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr4:79606200-79609600	Weak transcription	NHLF	lung
9	chr4:79606600-79609600	Weak transcription	HSMM	muscle
10	chr4:79606600-79612200	Weak transcription	HSMMtube	muscle
11	chr4:79607400-79609200	Weak transcription	Fetal Heart	heart
12	chr4:79608400-79612200	Enhancers	K562	blood
13	chr4:79609000-79609200	Enhancers	Placenta	Placenta
14	chr4:79609000-79610800	Enhancers	NHEK	skin
15	chr4:79609000-79616000	Enhancers	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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