Variant report

Variant	rs72861215
Chromosome Location	chr4:79603991-79603992
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:7)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:79602819..79606934-chr4:79608237..79614104,8	K562	blood:
2	chr4:79603191..79606883-chr4:79607148..79610716,4	K562	blood:
3	chr4:79598044..79600177-chr4:79603661..79605687,2	MCF-7	breast:
4	chr4:79603223..79604986-chr4:79695668..79697627,2	K562	blood:

(count:7 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ANXA3-1	chr4:79601915-79605655	NONHSAT097070
2	lnc-ANXA3-1	chr4:79601915-79605655	NONHSAT097071
3	lnc-ANXA3-1	chr4:79601915-79605655	NONHSAT097072
4	lnc-ANXA3-1	chr4:79601915-79605655	NONHSAT097073
5	lnc-ANXA3-1	chr4:79601915-79605655	NONHSAT097074
6	lnc-ANXA3-1	chr4:79601915-79605655	NONHSAT097075
7	lnc-ANXA3-1	chr4:79601913-79604339	NONHSAT097076

No data

No data

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10019277	0.88[AFR][1000 genomes]
rs10021286	0.92[AFR][1000 genomes]
rs10028457	1.00[AMR][1000 genomes]
rs10029168	0.83[AFR][1000 genomes]
rs11935221	1.00[AMR][1000 genomes]
rs11944942	1.00[AMR][1000 genomes]
rs11946188	1.00[AMR][1000 genomes]
rs28362073	1.00[AMR][1000 genomes]
rs28482221	1.00[AMR][1000 genomes]
rs28538252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28565274	1.00[AMR][1000 genomes]
rs28665908	1.00[AFR][1000 genomes]
rs28713672	0.95[AFR][1000 genomes]
rs6822688	1.00[AMR][1000 genomes]
rs72861208	1.00[AFR][1000 genomes]
rs72861218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72861224	1.00[AFR][1000 genomes]
rs72861226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72861231	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72861238	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72861261	0.95[AFR][1000 genomes]
rs7661163	1.00[AMR][1000 genomes]
rs7662620	1.00[AMR][1000 genomes]
rs7668993	0.95[AFR][1000 genomes]
rs9998371	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79599200-79605400	Weak transcription	Small Intestine	intestine
2	chr4:79602200-79604000	Weak transcription	K562	blood
3	chr4:79602600-79604200	Enhancers	Fetal Intestine Large	intestine
4	chr4:79602800-79604200	Enhancers	Duodenum Mucosa	Duodenum
5	chr4:79603000-79604200	Enhancers	Fetal Intestine Small	intestine
6	chr4:79603200-79604800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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