Variant report

Variant	rs28362073
Chromosome Location	chr4:79591544-79591545
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10028457	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11935221	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11944942	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11946188	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28482221	1.00[AMR][1000 genomes]
rs28538252	1.00[AMR][1000 genomes]
rs28565274	1.00[AMR][1000 genomes]
rs6822688	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72861215	1.00[AMR][1000 genomes]
rs72861218	1.00[AMR][1000 genomes]
rs72861226	1.00[AMR][1000 genomes]
rs72861231	1.00[AMR][1000 genomes]
rs72861238	1.00[AMR][1000 genomes]
rs7661163	1.00[AMR][1000 genomes]
rs7662620	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79583800-79593000	Weak transcription	Duodenum Mucosa	Duodenum
2	chr4:79586800-79595400	Enhancers	Primary B cells from peripheral blood	blood
3	chr4:79588000-79594400	Enhancers	K562	blood
4	chr4:79588400-79593600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr4:79589400-79595400	Enhancers	Primary B cells from cord blood	blood
6	chr4:79589800-79591800	Weak transcription	Fetal Intestine Small	intestine
7	chr4:79589800-79593200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr4:79590000-79591800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr4:79590000-79593600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr4:79590000-79593600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr4:79590000-79595200	Weak transcription	NHDF-Ad	bronchial
12	chr4:79590200-79591600	Weak transcription	Primary hematopoietic stem cells	blood
13	chr4:79590800-79592000	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr4:79590800-79592200	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr4:79591200-79594800	Enhancers	Fetal Intestine Large	intestine
16	chr4:79591400-79591600	Enhancers	Placenta	Placenta
17	chr4:79591400-79594000	Enhancers	HepG2	liver
18	chr4:79591400-79594600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr4:79591400-79594600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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