Variant report

Variant	rs28565274
Chromosome Location	chr4:79558475-79558476
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:79557761..79562686-chr4:79563110..79568703,4	K562	blood:
2	chr4:79557978..79560128-chr4:79697718..79699238,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000251442	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10028457	1.00[AMR][1000 genomes]
rs11935221	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11944942	1.00[AMR][1000 genomes]
rs11946188	1.00[AMR][1000 genomes]
rs28362073	1.00[AMR][1000 genomes]
rs28482221	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28538252	1.00[AMR][1000 genomes]
rs6822688	1.00[AMR][1000 genomes]
rs72861215	1.00[AMR][1000 genomes]
rs72861218	1.00[AMR][1000 genomes]
rs72861226	1.00[AMR][1000 genomes]
rs72861231	1.00[AMR][1000 genomes]
rs72861238	1.00[AMR][1000 genomes]
rs7661163	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7662620	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79549600-79560000	Weak transcription	HMEC	breast
2	chr4:79550400-79564200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:79551400-79578200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr4:79553000-79561600	Weak transcription	Placenta	Placenta
5	chr4:79553200-79559200	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr4:79553200-79559200	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr4:79553200-79563000	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr4:79554000-79558600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr4:79554000-79561600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr4:79555200-79558800	Weak transcription	Primary T cells from cord blood	blood
11	chr4:79555400-79558800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr4:79555400-79562000	Weak transcription	Brain Substantia Nigra	brain
13	chr4:79555600-79558800	Weak transcription	K562	blood
14	chr4:79555600-79559000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr4:79555600-79564000	Weak transcription	Fetal Intestine Large	intestine
16	chr4:79555800-79566400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr4:79556000-79564000	Weak transcription	Brain Hippocampus Middle	brain
18	chr4:79557200-79568000	Enhancers	Primary B cells from cord blood	blood
19	chr4:79557600-79558800	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr4:79558400-79559200	Enhancers	Sigmoid Colon	Sigmoid Colon
21	chr4:79558400-79559200	Enhancers	GM12878-XiMat	blood
22	chr4:79558400-79559800	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr4:79558400-79560800	Enhancers	Primary hematopoietic stem cells	blood
24	chr4:79558400-79561000	Enhancers	Primary B cells from peripheral blood	blood

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