Variant report

Variant	rs72861218
Chromosome Location	chr4:79604880-79604881
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:6)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:79602819..79606934-chr4:79608237..79614104,8	K562	blood:
2	chr4:79603993..79609685-chr4:79610850..79614972,9	K562	blood:
3	chr4:79604157..79606755-chr4:79612814..79614519,2	MCF-7	breast:
4	chr4:79603191..79606883-chr4:79607148..79610716,4	K562	blood:
5	chr4:79598044..79600177-chr4:79603661..79605687,2	MCF-7	breast:
6	chr4:79603223..79604986-chr4:79695668..79697627,2	K562	blood:
7	chr4:79604462..79605994-chr4:79695517..79698209,2	MCF-7	breast:

(count:6 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ANXA3-1	chr4:79601915-79605655	NONHSAT097070
2	lnc-ANXA3-1	chr4:79601915-79605655	NONHSAT097071
3	lnc-ANXA3-1	chr4:79601915-79605655	NONHSAT097072
4	lnc-ANXA3-1	chr4:79601915-79605655	NONHSAT097073
5	lnc-ANXA3-1	chr4:79601915-79605655	NONHSAT097074
6	lnc-ANXA3-1	chr4:79601915-79605655	NONHSAT097075

No data

No data

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10019277	0.88[AFR][1000 genomes]
rs10021286	0.92[AFR][1000 genomes]
rs10028457	1.00[AMR][1000 genomes]
rs10029168	0.83[AFR][1000 genomes]
rs11935221	1.00[AMR][1000 genomes]
rs11944942	1.00[AMR][1000 genomes]
rs11946188	1.00[AMR][1000 genomes]
rs28362073	1.00[AMR][1000 genomes]
rs28482221	1.00[AMR][1000 genomes]
rs28538252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28565274	1.00[AMR][1000 genomes]
rs28665908	1.00[AFR][1000 genomes]
rs28713672	0.95[AFR][1000 genomes]
rs6822688	1.00[AMR][1000 genomes]
rs72861208	1.00[AFR][1000 genomes]
rs72861215	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72861224	1.00[AFR][1000 genomes]
rs72861226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72861231	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72861238	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72861261	0.95[AFR][1000 genomes]
rs7661163	1.00[AMR][1000 genomes]
rs7662620	1.00[AMR][1000 genomes]
rs7668993	0.95[AFR][1000 genomes]
rs9998371	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79599200-79605400	Weak transcription	Small Intestine	intestine
2	chr4:79604000-79605000	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr4:79604000-79605600	Enhancers	K562	blood
4	chr4:79604200-79605200	Weak transcription	Fetal Intestine Small	intestine
5	chr4:79604200-79610000	Weak transcription	Fetal Intestine Large	intestine
6	chr4:79604600-79606200	Enhancers	NHLF	lung
7	chr4:79604600-79606600	Enhancers	HSMM	muscle
8	chr4:79604800-79605400	Enhancers	Fetal Heart	heart
9	chr4:79604800-79606000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr4:79604800-79606600	Enhancers	HSMMtube	muscle
11	chr4:79604800-79606600	Enhancers	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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