Variant report

Variant	rs72861261
Chromosome Location	chr4:79616054-79616055
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10019277	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10021286	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10029168	0.87[AFR][1000 genomes]
rs28538252	0.95[AFR][1000 genomes]
rs28665908	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs28713672	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs72861208	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs72861215	0.95[AFR][1000 genomes]
rs72861218	0.95[AFR][1000 genomes]
rs72861224	0.95[AFR][1000 genomes]
rs72861226	0.95[AFR][1000 genomes]
rs72861231	0.97[AFR][1000 genomes]
rs72861238	1.00[AFR][1000 genomes]
rs7668993	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9998371	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79610000-79616400	Enhancers	Fetal Intestine Large	intestine
2	chr4:79610600-79617800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr4:79611400-79616200	Enhancers	Primary hematopoietic stem cells	blood
4	chr4:79611800-79616400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr4:79612200-79616400	Enhancers	Fetal Intestine Small	intestine
6	chr4:79613400-79616600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr4:79614200-79616200	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr4:79614600-79618200	Enhancers	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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