Variant report

Variant	rs10019277
Chromosome Location	chr4:79620703-79620704
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10021286	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10029168	0.81[AFR][1000 genomes]
rs28538252	0.88[AFR][1000 genomes]
rs28665908	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs28713672	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs72861208	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs72861215	0.88[AFR][1000 genomes]
rs72861218	0.88[AFR][1000 genomes]
rs72861224	0.88[AFR][1000 genomes]
rs72861226	0.88[AFR][1000 genomes]
rs72861231	0.90[AFR][1000 genomes]
rs72861238	0.93[AFR][1000 genomes]
rs72861261	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7668993	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9998371	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79618800-79622000	Weak transcription	K562	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links