Variant report

Variant	rs72861208
Chromosome Location	chr4:79598879-79598880
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10019277	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10021286	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10029168	0.83[AFR][1000 genomes]
rs28538252	1.00[AFR][1000 genomes]
rs28665908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28713672	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72861215	1.00[AFR][1000 genomes]
rs72861218	1.00[AFR][1000 genomes]
rs72861224	1.00[AFR][1000 genomes]
rs72861226	1.00[AFR][1000 genomes]
rs72861231	0.95[AFR][1000 genomes]
rs72861238	0.95[AFR][1000 genomes]
rs72861261	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7668993	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9998371	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79597800-79599000	Enhancers	K562	blood
2	chr4:79598400-79599000	Enhancers	Fetal Intestine Small	intestine
3	chr4:79598400-79599200	Enhancers	Brain Hippocampus Middle	brain
4	chr4:79598600-79599200	Enhancers	Fetal Intestine Large	intestine
5	chr4:79598800-79599200	Enhancers	Small Intestine	intestine
6	chr4:79598800-79599200	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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