Variant report

Variant	rs28505635
Chromosome Location	chr18:39182853-39182854
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs28394187	0.90[AFR][1000 genomes]
rs28418883	0.90[AFR][1000 genomes]
rs28496400	0.90[AFR][1000 genomes]
rs28501996	0.90[AFR][1000 genomes]
rs28545764	0.87[AFR][1000 genomes]
rs28588945	0.87[AFR][1000 genomes]
rs28604324	0.90[AFR][1000 genomes]
rs28615929	0.84[AFR][1000 genomes]
rs28631059	0.90[AFR][1000 genomes]
rs28697585	0.90[AFR][1000 genomes]
rs7229095	0.90[AFR][1000 genomes]
rs7230324	0.90[AFR][1000 genomes]
rs9954460	0.90[AFR][1000 genomes]
rs9954713	0.90[AFR][1000 genomes]
rs9954840	0.90[AFR][1000 genomes]
rs9955179	0.81[AFR][1000 genomes]
rs9959387	0.90[AFR][1000 genomes]
rs9959468	0.90[AFR][1000 genomes]
rs9962059	0.81[AFR][1000 genomes]
rs9965988	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066869	chr18:38742896-39680723	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv543685	chr18:38742896-39680723	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv949609	chr18:39126941-40070286	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:39174800-39190400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr18:39182400-39183000	Enhancers	Fetal Heart	heart
3	chr18:39182600-39204400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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