Variant report
| Variant | rs9962059 |
|---|---|
| Chromosome Location | chr18:39246940-39246941 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr18:39241277..39243459-chr18:39245015..39247157,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs28394187 | 0.88[AFR][1000 genomes] |
| rs28418883 | 0.88[AFR][1000 genomes] |
| rs28496400 | 0.88[AFR][1000 genomes] |
| rs28501996 | 0.88[AFR][1000 genomes] |
| rs28505635 | 0.81[AFR][1000 genomes] |
| rs28545764 | 0.85[AFR][1000 genomes] |
| rs28604324 | 0.88[AFR][1000 genomes] |
| rs28615929 | 0.82[AFR][1000 genomes] |
| rs28631059 | 0.88[AFR][1000 genomes] |
| rs28697585 | 0.88[AFR][1000 genomes] |
| rs7227613 | 0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7229095 | 0.88[AFR][1000 genomes] |
| rs7230273 | 0.96[AFR][1000 genomes] |
| rs7230324 | 0.88[AFR][1000 genomes] |
| rs9954460 | 0.88[AFR][1000 genomes] |
| rs9954713 | 0.88[AFR][1000 genomes] |
| rs9954840 | 0.88[AFR][1000 genomes] |
| rs9954989 | 1.00[EUR][1000 genomes] |
| rs9955179 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9959387 | 0.88[AFR][1000 genomes] |
| rs9959468 | 0.88[AFR][1000 genomes] |
| rs9965619 | 1.00[EUR][1000 genomes] |
| rs9965988 | 0.84[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1066869 | chr18:38742896-39680723 | Enhancers Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv543685 | chr18:38742896-39680723 | Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv949609 | chr18:39126941-40070286 | Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 11 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr18:39245400-39247200 | Enhancers | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
| 2 | chr18:39245800-39247000 | Enhancers | HUVEC | blood vessel |
